View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2888R-Insertion-9 (Length: 102)

Name: NF2888R-Insertion-9
Description: NF2888R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2888R-Insertion-9
NF2888R-Insertion-9
[»] chr4 (5 HSPs)
chr4 (10-102)||(8563695-8563787)
chr4 (10-57)||(2928864-2928911)
chr4 (10-57)||(12753708-12753755)
chr4 (10-53)||(22746632-22746675)
chr4 (16-59)||(12746568-12746612)
[»] chr6 (2 HSPs)
chr6 (10-79)||(25398210-25398279)
chr6 (10-79)||(25393891-25393960)
[»] chr5 (3 HSPs)
chr5 (10-79)||(18079961-18080030)
chr5 (10-79)||(29742139-29742208)
chr5 (13-74)||(31109010-31109071)
[»] chr8 (3 HSPs)
chr8 (10-79)||(23429679-23429748)
chr8 (10-57)||(36911975-36912022)
chr8 (10-56)||(15007143-15007189)
[»] chr7 (3 HSPs)
chr7 (10-79)||(42937577-42937646)
chr7 (10-74)||(42939877-42939941)
chr7 (10-74)||(20125311-20125375)
[»] chr2 (3 HSPs)
chr2 (10-79)||(26195424-26195493)
chr2 (13-57)||(17319046-17319090)
chr2 (19-102)||(7384785-7384868)
[»] chr1 (4 HSPs)
chr1 (10-95)||(15552963-15553048)
chr1 (13-102)||(3850378-3850467)
chr1 (10-57)||(145402-145449)
chr1 (13-79)||(11444037-11444104)
[»] chr3 (1 HSPs)
chr3 (10-101)||(15636260-15636351)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 5e-41; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 5e-41
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 8563787 - 8563695
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattcctttc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  8563787 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctataatattctctctttattcctttc 8563695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 2928911 - 2928864
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacactt 57  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2928911 atatgtgtcctataaataggacctacattacaatgtaatgacacactt 2928864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 12753755 - 12753708
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacactt 57  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  12753755 atatgtgtcttataaataggacctacattacaatgtaatgacacactt 12753708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 22746632 - 22746675
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacac 53  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  22746632 atatgtgtcctataaataggacctacattacaatgtaatgacac 22746675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 12746612 - 12746568
Alignment:
Q  16 gtcctataaatagaacctatattacaatgt-aatgacacacttat 59  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  12746612 gtcctataaatagaacctatattataatgtgaatgacacacttat 12746568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 9e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 25398210 - 25398279
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctct 79  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||| ||||| ||||    
T  25398210 atatgtgtcctataaataggacctacattacaatgtaatgacacacttgtgaagtaatacaatatactct 25398279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 25393891 - 25393960
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctct 79  Q
    ||||||||||||||||||| | ||| |||||||||| ||||||||||| | || ||||| ||||| ||||    
T  25393891 atatgtgtcctataaataggatctacattacaatgtgatgacacacttgtgaactaatacaatatactct 25393960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 9e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 18080030 - 18079961
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctct 79  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||| ||||| ||||    
T  18080030 atatgtgtcctataaataggacctacattacaatgtaatgacacacttgtgaagtaatacaatatactct 18079961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 29742208 - 29742139
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctct 79  Q
    ||||||||| ||||||||| ||||| |||| ||||||||||||||||| | |||||||| ||||| ||||    
T  29742208 atatgtgtcatataaataggacctacattaaaatgtaatgacacacttgtgaagtaatacaatatactct 29742139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 31109071 - 31109010
Alignment:
Q  13 tgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatat 74  Q
    |||||| ||||||||| | ||||||| |||||||||||||||||| | |||||||| |||||    
T  31109071 tgtgtcatataaataggatctatattgcaatgtaatgacacacttgtgaagtaatataatat 31109010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 23429679 - 23429748
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctct 79  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||| | ||||| ||||    
T  23429679 atatgtgtcctataaataggacctacattacaatgtaatgacacacttgtgaagtaaaacaatatactct 23429748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 36912022 - 36911975
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacactt 57  Q
    |||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  36912022 atatgtatcctataaataggacctacattacaatgtaatgacacactt 36911975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 15007143 - 15007189
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacact 56  Q
    ||||||||||||||||| | ||||| |||||||||||| ||||||||    
T  15007143 atatgtgtcctataaatgggacctacattacaatgtaaagacacact 15007189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 42937577 - 42937646
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctct 79  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| | |||||||| ||||| ||||    
T  42937577 atatgtgtcctataaataggaccaacattacaatgtaatgacacacttttgaagtaatacaatatactct 42937646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 42939877 - 42939941
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatat 74  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||| | |||||||| |||||    
T  42939877 atatgtgtcctataaataagacctacattacaatgtaatgacacacttgtgaagtaatacaatat 42939941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 20125311 - 20125375
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatat 74  Q
    |||||| |||||||||||| || |||||| |||||||||||||||||| | |||||||| |||||    
T  20125311 atatgtatcctataaataggacatatattgcaatgtaatgacacacttgtgaagtaatacaatat 20125375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 26195424 - 26195493
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctct 79  Q
    ||||||||||||||||||| ||||||||| |||||||||  ||||||||| |||||||| ||||| ||||    
T  26195424 atatgtgtcctataaataggacctatattgcaatgtaatatcacacttatgaagtaatacaatatactct 26195493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 17319090 - 17319046
Alignment:
Q  13 tgtgtcctataaatagaacctatattacaatgtaatgacacactt 57  Q
    |||||||||||||||||||||||| | |||||||| |||||||||    
T  17319090 tgtgtcctataaatagaacctataatgcaatgtaaagacacactt 17319046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 7384868 - 7384785
Alignment:
Q  19 ctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattcctttc 102  Q
    |||||||||| ||||| ||||| || ||| |||| ||||   ||| |||| ||||| |||| |||||||||||||||| |||||    
T  7384868 ctataaataggacctacattaccatataaagacatacttgagaagcaatacaatatactcttatattctctctttatttctttc 7384785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 15552963 - 15553048
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttat 95  Q
    |||||| |||||||||||| ||||||||| |||||||||||||||||| | |||||||| ||||| || |  ||||||| ||||||    
T  15552963 atatgtatcctataaataggacctatattgcaatgtaatgacacacttgtgaagtaatacaatatactatcttattctccctttat 15553048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 3850467 - 3850378
Alignment:
Q  13 tgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattcctttc 102  Q
    |||||||||||||||||| ||||||| |||| ||| ||||||||||| |||||||  ||||| ||||  | ||||| | |||||||||||    
T  3850467 tgtgtcctataaatagaatctatattgcaatataaagacacacttatgaagtaatgcaatatactctcttcttctcccgttattcctttc 3850378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 145449 - 145402
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacactt 57  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  145449 atatgcgtcctataaataggacctacattacaatgtaatgacacactt 145402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 11444104 - 11444037
Alignment:
Q  13 tgtgtcctataaatagaacctatattacaatgt-aatgacacacttattaagtaataaaatatgctct 79  Q
    |||||||||||||||| || ||||||| ||||| ||| |||||||| | |||||||| ||||| ||||    
T  11444104 tgtgtcctataaataggacttatattataatgtgaattacacacttgtgaagtaatacaatatactct 11444037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 15636351 - 15636260
Alignment:
Q  10 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattccttt 101  Q
    |||| |||| ||||||||| || || |||||||| ||||||||||||| | |||||||  ||||| |||| || ||||||||||||| ||||    
T  15636351 atatatgtcttataaataggacatacattacaatctaatgacacacttgtaaagtaatgcaatatactctcatgttctctctttatttcttt 15636260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University