View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888_high_15 (Length: 240)
Name: NF2888_high_15
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41521159 - 41521382
Alignment:
| Q |
1 |
agtgataataccctacattcgaacaaagaaacaaaattagatgcctttgttttatatagatacttgaaagnnnnnnncaatttattcatatggtcattat |
100 |
Q |
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| T |
41521159 |
agtgataataccctacattcgaacaaagaaacaaaattagatgcctttgttttatatagatacttgaaagaaaaaaacaatttattcatatggtcattat |
41521258 |
T |
|
| Q |
101 |
tcatggagccaaaacctaaagaggaagagagagaggaatattatggcaagtgcaaacaaagcaactatttctcttttaagttggacccatatctttaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41521259 |
tcatggagccaaaacctaaagaggaagagagagaggaatattatggcaagtgcaaacaaagcaactatttctcttttaagttggacccatatctttaata |
41521358 |
T |
|
| Q |
201 |
tgagaaagaattataagtagctca |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
41521359 |
tgagaaagaattataagtagctca |
41521382 |
T |
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