View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888_high_18 (Length: 230)
Name: NF2888_high_18
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 5291252 - 5291052
Alignment:
| Q |
13 |
gcacagatcctgaaagctactaattcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5291252 |
gcacagatcctgaaagctactaattcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcac |
5291153 |
T |
|
| Q |
113 |
cattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccattctgattcaagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5291152 |
cattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccattctgattcaagt |
5291053 |
T |
|
| Q |
213 |
t |
213 |
Q |
| |
|
| |
|
|
| T |
5291052 |
t |
5291052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 14950570 - 14950371
Alignment:
| Q |
14 |
cacagatcctgaaagctactaattcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcacc |
113 |
Q |
| |
|
|||| ||||||||| || || ||||||||| | ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
14950570 |
cacaaatcctgaaatcttatagttcatttcttttttggatgtctcctacagttatatctgctgttgttttccttggatgtgctgttaccaagagtgcacc |
14950471 |
T |
|
| Q |
114 |
attaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccattctgattcaagtt |
213 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||| ||||||| |||||||||| | ||||||||||| |
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|
| T |
14950470 |
attgaatgctgaaaccattttcacagttcttgcaacattggggaacatgggagagcctattataatgttccctgaggctctatccactatgattcaagtt |
14950371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 5283757 - 5283561
Alignment:
| Q |
13 |
gcacagatcctgaaagctactaattcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcac |
112 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||| ||||||||||||||||| ||| |||| || |||||||| |||||||||||||| |||| ||||||| |
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|
| T |
5283757 |
gcacagatcctgagagcttctagttcatttctttattggatgtctcctactgttatatccgccgttgttttccttggatgtgctgtttccaaaagtgcac |
5283658 |
T |
|
| Q |
113 |
cattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccattctgattca |
209 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||| || ||||| |||||| ||||||| |
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|
| T |
5283657 |
cattgaatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaaccatttaaattgatcccagaggctctttccattatgattca |
5283561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 5305870 - 5306043
Alignment:
| Q |
37 |
tcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcaccattaaatgctgaaaccattttca |
136 |
Q |
| |
|
|||||||| |||||| |||||||||||||| | |||| ||||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||| |
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|
| T |
5305870 |
tcatttctttattggctgtctcctacagttatttctg---ttgttttccttggatgtgctgtttccaagagtgcaccattgaatgctgaaatcattttca |
5305966 |
T |
|
| Q |
137 |
cagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccattctgattcaagtt |
213 |
Q |
| |
|
|| |||||| | ||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
5305967 |
caattcttgtagcattgaggaacatggcagaacctgttaggatgatccctgaggctctatccattctgattcaagtt |
5306043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 15125095 - 15125293
Alignment:
| Q |
13 |
gcacagatcctgaaagctactaattcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcac |
112 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |||||||| |||||| || | || |||||||||||||| ||| |||| |||| || || ||||||| |
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|
| T |
15125095 |
gcacagatcctgaaagcttctggttcatttctttattggatatctcctgcaatggtttctgctgttgttttccttgcatgttctgtcactaaaagtgcac |
15125194 |
T |
|
| Q |
113 |
cattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccattctgattcaag |
211 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||| | ||||||||| |
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|
| T |
15125195 |
cattgaatgctgaaaccattttcacagttcttgcaacattaaggaacatgggagaacctgttagaactatcccagaggctctatccaatatgattcaag |
15125293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 5313081 - 5313240
Alignment:
| Q |
38 |
catttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcaccattaaatgctgaaaccattttcac |
137 |
Q |
| |
|
||||||| |||||| |||||||||||||| | |||||||||| || ||||||| || ||| ||||||||||| ||||| || |||||||| || |
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|
| T |
5313081 |
catttctttattggctgtctcctacagttattcctgctgttgtcttccttggatgcatatttttcaatagtgcaccattgaatgccgataccatttttac |
5313180 |
T |
|
| Q |
138 |
agttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||| || |||||||| |
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|
| T |
5313181 |
agttcttgcaacattgaggaacatgggagatcctgttcttatgatcccagaggctctatc |
5313240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 11806522 - 11806334
Alignment:
| Q |
13 |
gcacagatcctgaaagctactaattcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcac |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||||||| ||||||||||| ||||| |
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|
| T |
11806522 |
gcacagatcctgaaagctgctaattcatttctctattggatgtctcctatggttatacctgcttttgtttttgttggatgtgttgttaccaagaatgcac |
11806423 |
T |
|
| Q |
113 |
cattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccatt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
11806422 |
cattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaggctctatccatt |
11806334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 39522902 - 39523096
Alignment:
| Q |
16 |
cagatcctgaaagctactaattcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcaccat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || || ||| ||| || ||||| ||||||||||| |||||| ||||||| | | | || |
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|
| T |
39522902 |
cagatcctgaaagctactaattcatttctctattggaagtatcatacggttatacctgcttttgtttttgtttgatgtgttgttacctacaccatcctat |
39523001 |
T |
|
| Q |
116 |
taaatgctgaaa-ccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccattctgattca |
209 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
39523002 |
taaatgctgaaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaatgatccctgaggcactatccattatgattca |
39523096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 6076391 - 6076195
Alignment:
| Q |
13 |
gcacagatcctgaaagctactaattcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||| || ||||| ||||||||||| |||||| ||||||| | | | |
|
|
| T |
6076391 |
gcacagatcctgaaagctactaattcatttctctattggaagtctcctacggttatacctgcttttgtttttgtttgatgtgttgttacctacaccatcc |
6076292 |
T |
|
| Q |
113 |
cattaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccattctgattca |
209 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| || ||||||||| ||||||| |
|
|
| T |
6076291 |
tattaaatgctgaaaccattttcacagtccttgcaacattgaggagcatgggagaacctgttagaatgattactgaggcactatccattatgattca |
6076195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 31527251 - 31527054
Alignment:
| Q |
16 |
cagatcctgaaagctactaattcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcaccat |
115 |
Q |
| |
|
||||||||||||||| ||| ||||||||| | |||||||||||||||| || |||| |||||||||| ||||||||||| || |||| || ||||||| |
|
|
| T |
31527251 |
cagatcctgaaagcttctagttcatttcttttttggatgtctcctacaattatatcatctgttgttttccttggatgtgctatttccaatagcgcaccat |
31527152 |
T |
|
| Q |
116 |
taaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccattctgattcaagtt |
213 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||| || ||||||||||| ||| ||||||||||| |
|
|
| T |
31527151 |
tgaatgctcaaaccattttcacagttcttgcaacattgaaaagcatgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagtt |
31527054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 33002337 - 33002144
Alignment:
| Q |
16 |
cagatcctgaaagctactaattcatttctctattggatgtctcctacagttgtatctgctgttgtttttgttggatgtgctgttaccaagagtgcaccat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || || ||| || || ||||| ||||||||||| |||||| ||||||| | | | || |
|
|
| T |
33002337 |
cagatcctgaaagctactaattcatttctctattggaagtatcatacggtcatacctgcttttgtttttgtttgatgtgttgttacctacaccatcctat |
33002238 |
T |
|
| Q |
116 |
taaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatccctgaagctctatccattctgattca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
33002237 |
taaatgctgaaaccattttcacagttcttgcaacatcgaagagcatgggagaacctgttagaatgatccctgaggcactatccattatgattca |
33002144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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