View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888_high_2 (Length: 487)
Name: NF2888_high_2
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 9 - 472
Target Start/End: Complemental strand, 835889 - 835427
Alignment:
| Q |
9 |
caagaatatggaaaataagtagcttaccctagaggcaaagaaatagaagcaggacccgaaaactctccgggttgaattgctttcagatttgaaccaaata |
108 |
Q |
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| T |
835889 |
caagaaaatggaaaataagtagcttaccctagaggcaaagaaatagaagcaggacccgaaaactctccgggttgaatttctttcagatttgaaccaaata |
835790 |
T |
|
| Q |
109 |
atattttagcttcgttcaagaatgagacggaataaaacggcctgacaaagtcatgatggtcaatatgaggaggaatgcagtcccctacatcatatatgtt |
208 |
Q |
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| T |
835789 |
atattttagcttcgttcaagaatgagacggaataaaacggcctgacaaagtcatgatggtcaatgtgaggaggaatgcagtcccctacatcatatatgtt |
835690 |
T |
|
| Q |
209 |
gacaatgcaactgtcaggaacacacgtcggaggaattatgtttcatctaaacattctctcgatcatttgcttgaacacgtccggcaaaggatcaacctct |
308 |
Q |
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| T |
835689 |
gacaatgcaactgtcaggaacacacgtcggaggaattatgttccatctaaccattctctttatcatttgcttgaacacgtccggcaaaggatcaacctct |
835590 |
T |
|
| Q |
309 |
tcagttctacatataccaggagggttgccatatttgtcctgcaacattttacaaaagtaataagtatcaaatagtaactactaactagagatgaaaacta |
408 |
Q |
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| T |
835589 |
tcagttctacatataccaggagggttaccatatttgtcctgcaacattttacaaaagtaataagtatcaaatagtaact----actagagatgaaaacta |
835494 |
T |
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| Q |
409 |
a---aatgcaccttaattacttaccactgcataattgtagcagcaaccaaattgcagggtttcacgt |
472 |
Q |
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| T |
835493 |
aaataatgcaccttaattacttaccactgcataattgtagcagcagccaaattgcagggtttcacgt |
835427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 42 - 472
Target Start/End: Complemental strand, 814123 - 813690
Alignment:
| Q |
42 |
ggcaaagaaatagaagcaggacccgaaaactctccgggttgaattgctttcagatttgaaccaaataatattttagcttcgttcaagaatgagacggaat |
141 |
Q |
| |
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||||||||||| ||||| ||||| |||||||||| || ||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
814123 |
ggcaaagaaatcgaagcgggaccaaaaaactctcctggacgaacagctttcaaatttgaaccaaataatattttagctttgttcaagaaagagacggaat |
814024 |
T |
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| Q |
142 |
aaaacggcctgacaaagtcatgatggtcaatatgaggaggaatgcagtcccctacatcatatatgttgacaatgcaactgtcaggaacacacgtcggagg |
241 |
Q |
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| T |
814023 |
aaaacggcctgacaaagtcatgatggtcaatatgaggaggaatgcagtcccctacatcatatatgttgacaatgcaactgtcaggaacacacgtcggagg |
813924 |
T |
|
| Q |
242 |
aattatgtttcatctaaacattctctcgatcatttgcttgaacacgtccggcaaaggatcaacctcttcagttctacatataccaggagggttgccatat |
341 |
Q |
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| T |
813923 |
aattattttccatctaaccatcctctttatcatttgcttgaacatgcgtggtaatggatcaacctcttcagttctacttataccaggggggttaccattt |
813824 |
T |
|
| Q |
342 |
ttgtcctgcaacattttacaaaagtaataagtatcaaatagtaactactaactagagatgaaaactaaaat---gcaccttaattacttaccactgcata |
438 |
Q |
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||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
813823 |
ttgtcctgcaacattttacaaaaataattagtatcaattagtaactactaactagagatgaaaactgaaatcaacaaccttaattacttaccactgcata |
813724 |
T |
|
| Q |
439 |
attgtagcagcaaccaaattgcagggtttcacgt |
472 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |
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| T |
813723 |
gttgtagcagcaaccaaattgtagggtttcacgt |
813690 |
T |
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