View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2888_high_20 (Length: 206)
Name: NF2888_high_20
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 46584244 - 46584434
Alignment:
| Q |
1 |
aaaggtgccggtggaagaaaaggcggcgaaaggaagaaagccgtttcaaaatcctccaaagccggtcttcaattccccgttggtcgtatcgctaggttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46584244 |
aaaggtgccggtggaagaaaaggcggcgaaaggaagaaagccgtttcaaaatcctccaaagccggtctccaattccccgttggtcgtatcgctaggttca |
46584343 |
T |
|
| Q |
101 |
tgaagaaaggtcgctattctcagcgtgttggcaccggtgctccgatctacctcgccgccgttctcgaatatctcgccgccgaggtattttc |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46584344 |
tgaagaaaggtcgctattctcagcgtgttggcaccggtgctccgatctacctcgccgccgttctcgaatatctcgccgccgaggtattttc |
46584434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 44072111 - 44072064
Alignment:
| Q |
36 |
gaaagccgtttcaaaatcctccaaagccggtcttcaattccccgttgg |
83 |
Q |
| |
|
|||| ||||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
44072111 |
gaaatccgtttcaagatcttcaaaagccggtcttcaattccccgttgg |
44072064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 630280 - 630436
Alignment:
| Q |
1 |
aaaggtgccggtggaagaaaaggcggcgaaaggaagaaagccgtttcaaaatcctccaaagccggtcttcaattccccgttggtcgtatcgctaggttca |
100 |
Q |
| |
|
||||||| |||||||| |||||||||| || ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
630280 |
aaaggtgtcggtggaataaaaggcggcaaagggaagaaagccgtttcaaagtcctccaaagtcggtcttcaattccccattggtcgtatcgcgaggttca |
630379 |
T |
|
| Q |
101 |
tgaagaaaggtcgctattctcagcgtgttggcaccggtgctccgatctacctcgccg |
157 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
630380 |
tgaagaaaggacactattctcagcgtattggcactggtgctccgatctacctcgccg |
630436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 26827825 - 26827909
Alignment:
| Q |
101 |
tgaagaaaggtcgctattctcagcgtgttggcaccggtgctccgatctacctcgccgccgttctcgaatatctcgccgccgaggt |
185 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||||||||||| | ||||| || || ||||| ||||| ||||| || ||||| |
|
|
| T |
26827825 |
tgaagaaaggtcgatatgctcagcgtgtcggcaccggtgctccggtttacctagctgcagttcttgaatacctcgctgctgaggt |
26827909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 35961607 - 35961679
Alignment:
| Q |
101 |
tgaagaaaggtcgctattctcagcgtgttggcaccggtgctccgatctacctcgccgccgttctcgaatatct |
173 |
Q |
| |
|
||||||||||||| ||| |||| ||||| |||||||||||||| | ||| | ||||| ||||| |||||||| |
|
|
| T |
35961607 |
tgaagaaaggtcgatatgctcaacgtgtcggcaccggtgctcctgtttacttagccgctgttcttgaatatct |
35961679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 34622378 - 34622414
Alignment:
| Q |
57 |
caaagccggtcttcaattccccgttggtcgtatcgct |
93 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
34622378 |
caaagctggtcttcaattccccgttggccgtatcgct |
34622414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University