View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2888_high_9 (Length: 284)
Name: NF2888_high_9
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888_high_9 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 38924991 - 38924707
Alignment:
| Q |
1 |
caatattggccacgggtttatcacgattctgccaaa-gtatacaatattgcaatatccctaaccatagaataaaatgacnnnnnnnngatagagtaagaa |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38924991 |
caatattggccacgggtttatcacaattctgccaaaagtatacaatattgcaatatccctaaccatagaataaaatgacaaaaaaaagatagagtaagaa |
38924892 |
T |
|
| Q |
100 |
acaagtaaagaaccaaaaccaaaacctgtcaaatttacaccttgtcatcattctgactcagttccaattccacctcattaatctgtgttacccttcttct |
199 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38924891 |
acaagtaaagaaccaaaaccaaaacttgtcaaatttacaccttgtcatcattctgactcagttccaattccacctcattaatctgtgttacccttcttct |
38924792 |
T |
|
| Q |
200 |
acatagagaaatcatgaaaatccacataagacctttcacaatcctcaccataccaattgtaacagttaaataatacaaccaccaa |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38924791 |
acatagagaaatcatgaaaatccacataagacctttcacaatcctcaccataccaattgtaacagttaaataatacaaccaccaa |
38924707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 44842095 - 44842162
Alignment:
| Q |
216 |
aaaatccacataagacctttcacaatcctcaccataccaattgtaacagttaaataatacaaccacca |
283 |
Q |
| |
|
||||||||||||||||| || |||| | | ||||| |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
44842095 |
aaaatccacataagaccctttacaacctttaccatcccaattgttacagtcaaataatacaaacacca |
44842162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University