View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888_low_10 (Length: 282)
Name: NF2888_low_10
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 29712151 - 29711881
Alignment:
| Q |
1 |
aatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
29712151 |
aatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgttttgtcttttgatggaattcccagccattatt |
29712052 |
T |
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| Q |
101 |
tttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29712051 |
tttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgagaaaggacaactgctagagcatca |
29711952 |
T |
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| Q |
201 |
ctcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgctctcaattcctgatg |
271 |
Q |
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| T |
29711951 |
gtcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgctttcaattcctgatg |
29711881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 29688480 - 29688744
Alignment:
| Q |
1 |
aatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatt |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |||| ||| ||| | ||||||| || ||||||| ||| || | |
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| T |
29688480 |
aatggtacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcactact |
29688579 |
T |
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| Q |
101 |
tttgtccgaaatacgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatca |
200 |
Q |
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| T |
29688580 |
tttgtccgaaatattgtacaaaaagtggtgatatcgttggaaccgacgat---aatgtattggccaagtataatgataaaggacagctgctagagcatca |
29688676 |
T |
|
| Q |
201 |
ctcctactgtgacaatgaatatggatccctagtggttatgtatacagaatctctgctctcaattcctg |
268 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
29688677 |
ctcctactcggaccatgaatatggatccctagtggttatgtatacagaatctctgctttcacttcctg |
29688744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 29696600 - 29696854
Alignment:
| Q |
14 |
aaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcattatttttgtccgaaata |
113 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||| | ||| ||| | ||||| |||||||| |
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| T |
29696600 |
aaatatgggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgtcctgtcttttgatggcaatcctgctcactccttttggccgaaata |
29696699 |
T |
|
| Q |
114 |
cgatacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgac |
213 |
Q |
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| T |
29696700 |
ctatacaaaaagtggtgatatcgttggaagaaacatgcgttgtgcattggccaagtataatgacaaaggacagctgcaagaacatcactcctactgtgac |
29696799 |
T |
|
| Q |
214 |
aatgaatatggatccctagtggttatgtatacagaatctctgctctcaattcctg |
268 |
Q |
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| | |||||| ||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
29696800 |
agtcaatatgtatccccagtggttatgtatacagaatctctgctttcaattcctg |
29696854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 117 - 266
Target Start/End: Complemental strand, 47451494 - 47451345
Alignment:
| Q |
117 |
tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctactgtgacaat |
216 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| || || | ||||| |||||||||||||||||||| || ||||||||| ||||| ||| || || |
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| T |
47451494 |
tacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatgacaaaggacagttgttagagcatcgttcctattgtaacgat |
47451395 |
T |
|
| Q |
217 |
gaatatggatccctagtggttatgtatacagaatctctgctctcaattcc |
266 |
Q |
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|| ||||| || |||||||||||| ||||| |||||||| ||| |||| |
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| T |
47451394 |
ccatgtggatgccaagtggttatgtacacagagtctctgctttcacttcc |
47451345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 4030382 - 4030300
Alignment:
| Q |
117 |
tacaaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatc |
199 |
Q |
| |
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||||| |||||||||||| |||||||| ||| ||||| || ||||| |||||| ||||||||||||| |||||||||||| |
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| T |
4030382 |
tacaataagtggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagttgctagagcatc |
4030300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 15349244 - 15349302
Alignment:
| Q |
11 |
ttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt |
69 |
Q |
| |
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||||||||||||||||| || ||||||| |||| ||||||||||| |||||||||||| |
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| T |
15349244 |
ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgtt |
15349302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 48147415 - 48147334
Alignment:
| Q |
9 |
agttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattccc |
90 |
Q |
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||||||||||||||||||| || ||||||| ||| || ||||||||||||| |||| ||||||| ||||||| |||||| |
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| T |
48147415 |
agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactcttaatttgtctattgatggcattccc |
48147334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 49043870 - 49043781
Alignment:
| Q |
9 |
agttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtcttttgatggaattcccagtcatta |
98 |
Q |
| |
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||||||||||||||||||| || ||||||| ||| || || |||||||||| ||||||||| ||| |||||| ||||||| |||||| |
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| T |
49043870 |
agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcatta |
49043781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 48903421 - 48903509
Alignment:
| Q |
119 |
caaaaagtggtgatatcgttggaacaaatgctggtaatgtattggccaagtataatgacaaaggacaactgctagagcatcactcctac |
207 |
Q |
| |
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|||||| |||||| ||| |||||||||| | ||||| | ||||| |||||||||||||||||||| | |||||| ||||||||||| |
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| T |
48903421 |
caaaaaatggtgacatcattggaacaaaagatggtactagattggtgaagtataatgacaaaggacagttcctagagtatcactcctac |
48903509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 48864395 - 48864454
Alignment:
| Q |
10 |
gttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgtt |
69 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||| || ||||||||||||||||||||| |
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|
| T |
48864395 |
gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgtt |
48864454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 48853037 - 48853109
Alignment:
| Q |
6 |
tacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagattcttgttttgtctttt |
78 |
Q |
| |
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|||||||||||||||||| ||| || ||||||| ||| || ||||||||||||| ||||||| | |||||| |
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| T |
48853037 |
tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttctttt |
48853109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 30124862 - 30124824
Alignment:
| Q |
166 |
aagtataatgacaaaggacaactgctagagcatcactcc |
204 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||| |
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| T |
30124862 |
aagtttaatgacaaaggacagctgctagagcatcactcc |
30124824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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