View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888_low_16 (Length: 236)
Name: NF2888_low_16
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31060681 - 31060901
Alignment:
| Q |
1 |
taattcgtttttatctttagtccactaagcatttgcgtcaaattaatagcctagtctactaaacaatatttatctaaatacatagtacatataaaatcag |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060681 |
taattcatttttatctttagtccactaagcatttgcgtcaaattaataacctagtctactaaacaatatttatctaaatacatagtacatataaaatcag |
31060780 |
T |
|
| Q |
101 |
tgtgaaagttaaaatagnnnnnnntacttataatttaaaatcacttatggttgtgcacggtatatagatatcacactctcatatacatcaattattaggg |
200 |
Q |
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||||||||||||||||| |||||||||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
31060781 |
tgtgaaagttaaaatagaaaaaaatacttataatttcaaatcacctatggttgtgcacgatctatagatatcacactctcatatacatcaattattaggg |
31060880 |
T |
|
| Q |
201 |
cacatatacactatttattat |
221 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
31060881 |
tacatatacactagttattat |
31060901 |
T |
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