View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2888_low_3 (Length: 456)
Name: NF2888_low_3
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2888_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 438
Target Start/End: Complemental strand, 54220416 - 54219992
Alignment:
| Q |
11 |
cacagacatgcacagaaaaaccaaataggcaaattattggaacctgggctataacacgatttccagctaggagtttagattctcgacttgaaacagctgt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220416 |
cacacacatgcacagaaaaaccaaataggcaaattattggaacctgggctataacacgatttccagctaggagtttagattctcgacttgaaacagctgt |
54220317 |
T |
|
| Q |
111 |
aattccgcgatataaacaatcaaagtgcacctgtcaacaagaacaatatgaaatgaagagtaaataataacaaatccagaagaaatgaataacatatttt |
210 |
Q |
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| T |
54220316 |
aattccgcgatataaacaatcaaagtgcacctgtcaacaagaaca---tgaaatgaagagtaaataataacaaatccagaagaaatgaataacatatttt |
54220220 |
T |
|
| Q |
211 |
cctttaatttccaaaagatgacaaacctgaacagttgatcctttttcagctattggaccttttccctcaagaaaatcatagtattttaatccatcagctg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220219 |
cctttaatttccaaaagatgacaaacctgaacagttgatcctttttcagctattggaccttttccctcaagaaaatcatagtattttaatccatcagctg |
54220120 |
T |
|
| Q |
311 |
aatcaaacatcacaagtttctgaattagtttatacagagcagaagaaaagtgaaaatagaaaataatttgatatagaagatagtttaacagcaaatgtga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
54220119 |
aatcaaacatcacaagtttctgaattagtttatacagagcagaagaaaagtgaaaatagaaaataatttgatattgaagatagtttaacagaaaatgtga |
54220020 |
T |
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| Q |
411 |
atgttgagtaaagaaggaaatacgggaa |
438 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
54220019 |
atgttgagtaaagaaggaaatacgggaa |
54219992 |
T |
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