View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2888_low_6 (Length: 321)

Name: NF2888_low_6
Description: NF2888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2888_low_6
NF2888_low_6
[»] chr5 (4 HSPs)
chr5 (16-321)||(29712152-29712457)
chr5 (134-304)||(29688295-29688462)
chr5 (139-311)||(29696404-29696576)
chr5 (130-175)||(42562181-42562226)
[»] chr4 (3 HSPs)
chr4 (270-307)||(48863570-48863607)
chr4 (270-307)||(49040871-49040908)
chr4 (17-57)||(48852757-48852797)
[»] chr1 (5 HSPs)
chr1 (273-312)||(24310521-24310560)
chr1 (17-52)||(24340475-24340510)
chr1 (17-52)||(24352840-24352875)
chr1 (273-307)||(24367473-24367507)
chr1 (273-307)||(24416083-24416117)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 29712457 - 29712152
Alignment:
Q  16 cttttctcattgagagctgatgcgtggaacgaaattgagggtgataattatttctcttattgcctggcccgtgaaaattccaaagtagagccgttcttaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712457 cttttctcattgagagctgatgcgtggaacgaaattgagggtgataattatttctcttattgcctggcccgtgaaaattccaaagtagagccgttcttaa 29712358  T
Q  116 atggggctattcacttcttaaacggggctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaaggga 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712357 atggggctattcacttcttaaatggggctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaaggga 29712258  T
Q  216 gcttctagagttgactttgccagctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712257 gcttctagagttgactttgccagctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatatggca 29712158  T
Q  316 catgat 321  Q
    ||||||    
T  29712157 catgat 29712152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 304
Target Start/End: Original strand, 29688295 - 29688462
Alignment:
Q  134 taaacggggctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgacttt 233  Q
    |||| |||| |||||||||||||||| ||  |||||||| ||||| |||||||||| |||| | |||||||| | ||||| | ||| |||||||| ||||    
T  29688295 taaatggggttattcactggttggcttttcattatgatagatcaatgaatgttattgttggatttcatttaacggaaaggaaacttatagagttgccttt 29688394  T
Q  234 gccagctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctat 304  Q
    |||   || |||||    || ||||||   |||||||||||||||| |||| |||||||||||||||||||    
T  29688395 gcctattggtataaataatggtcctag---agtgtatgatttatggctattcagaggatgtctcagtctat 29688462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 311
Target Start/End: Original strand, 29696404 - 29696576
Alignment:
Q  139 ggggctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgactttgccag 238  Q
    ||||||||||||||||||||| || || |||||||||||| |  ||||||| ||| || |||||||||  ||||| | ||||||||||||  |||||||     
T  29696404 ggggctattcactggttggcttttcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaacttctagagttgcgtttgccaa 29696503  T
Q  239 ctgatataacatctgctcctagtaaagtgtatgatttatgggtatttagaggatgtctcagtctatgggatat 311  Q
     ||| ||||    || |||||| |  | ||||||||||||||| | |||||||||||||  ||||||| ||||    
T  29696504 atgagataatcaatggtcctagcagggcgtatgatttatgggtgtatagaggatgtctcgctctatggcatat 29696576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 42562226 - 42562181
Alignment:
Q  130 ttcttaaacggggctattcactggttggctctttgttatgatatat 175  Q
    ||||| || |||||||||||||||||||||||| || |||||||||    
T  42562226 ttcttcaatggggctattcactggttggctcttcgtcatgatatat 42562181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 48863570 - 48863607
Alignment:
Q  270 tgatttatgggtatttagaggatgtctcagtctatggg 307  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  48863570 tgatttatgggtatttagaggatctctcagtctatggg 48863607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 49040908 - 49040871
Alignment:
Q  270 tgatttatgggtatttagaggatgtctcagtctatggg 307  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  49040908 tgatttatgggtatttaaaggatttctcagtctatggg 49040871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 48852757 - 48852797
Alignment:
Q  17 ttttctcattgagagctgatgcgtggaacgaaattgagggt 57  Q
    ||||||||||||||||| |||| ||||| ||||||||||||    
T  48852757 ttttctcattgagagctaatgcatggaaagaaattgagggt 48852797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 24310521 - 24310560
Alignment:
Q  273 tttatgggtatttagaggatgtctcagtctatgggatatg 312  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  24310521 tttatgggtatttagaggatttctcagtctatgggttatg 24310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 24340475 - 24340510
Alignment:
Q  17 ttttctcattgagagctgatgcgtggaacgaaattg 52  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24340475 ttttctcattgagagctaatgcgtggaacgaaattg 24340510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 24352840 - 24352875
Alignment:
Q  17 ttttctcattgagagctgatgcgtggaacgaaattg 52  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24352840 ttttctcattgagagctaatgcgtggaacgaaattg 24352875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 24367473 - 24367507
Alignment:
Q  273 tttatgggtatttagaggatgtctcagtctatggg 307  Q
    |||||||||||||||||||| ||||||||||||||    
T  24367473 tttatgggtatttagaggatttctcagtctatggg 24367507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 24416083 - 24416117
Alignment:
Q  273 tttatgggtatttagaggatgtctcagtctatggg 307  Q
    |||||||||||||||||||| ||||||||||||||    
T  24416083 tttatgggtatttagaggatttctcagtctatggg 24416117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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