View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2889_high_14 (Length: 251)
Name: NF2889_high_14
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2889_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 33781013 - 33781169
Alignment:
| Q |
11 |
cagagacgcctttaatttaaagtgccgtgctacatactgcatcttataatcttattacagaaacatatcatcacttgtacttacaatgcttctctgtgaa |
110 |
Q |
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| T |
33781013 |
cagagacgcctttaatttaaagtgctgtgctacatactgcatcttataatcttattacagaaacatatcatcacttgtacttacaatgcttctctgtgaa |
33781112 |
T |
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| Q |
111 |
acttttccattgtctccctccatcctggaagaatatctacacaccaacaaagtacag |
167 |
Q |
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| T |
33781113 |
acttttccattgtctccctccatcctggaagaatatctacacaccaacaaagtacag |
33781169 |
T |
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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 33781221 - 33781253
Alignment:
| Q |
219 |
catatttttcctctaaaggtaagttttttaact |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
33781221 |
catatttttcctctaaaggtaagttttttaact |
33781253 |
T |
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