View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2889_high_18 (Length: 205)
Name: NF2889_high_18
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2889_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 19270589 - 19270422
Alignment:
| Q |
22 |
agtctgcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcagccggtagaataaaacg |
121 |
Q |
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| T |
19270589 |
agtctgcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcggcaggcagaataaaacg |
19270490 |
T |
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| Q |
122 |
gcaaaactccgcttccaacgaacctttgcactttggaaaaggacaccgaatattaacgatgttatctt |
189 |
Q |
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| T |
19270489 |
gcaaaactccgcttccaacgaacctttacactttggaaaaggacaccgaatattaacgatgttatctt |
19270422 |
T |
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Target: chr2; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 19314882 - 19314710
Alignment:
| Q |
17 |
tgaagagtctgcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcagccggtagaata |
116 |
Q |
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|||| |||||| ||| ||||| ||||| || | ||||||||||||| ||||||||| | | | | |||||| || |||||||||| ||||| |||||| |
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| T |
19314882 |
tgaacagtctggaaatggacaatagaatttattcgaaacatcgaacaaagcctcacaaagcgccttaccccaccgttcaaaaaccttggccggaagaata |
19314783 |
T |
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| Q |
117 |
aaacggcaaaactccgcttccaacgaacctttgcactttggaaaaggacaccgaatattaacgatgttatctt |
189 |
Q |
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| T |
19314782 |
gaacggcaaaaatccgcctccaaggaacctttgcaccctggaaaaggacactgaattttgacgatgttttctt |
19314710 |
T |
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