View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2889_high_2 (Length: 553)
Name: NF2889_high_2
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2889_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 36521109 - 36521623
Alignment:
| Q |
18 |
atagttactaaactgaatatcagtttagcaaaaaccacaagatatgtcatgaatgggcagacattgctcccttgtagccaaaacctctagatgagatcgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36521109 |
atagttactaaactgaatatcagtttagcaaaaaacacaagatatgtcatgaatgggcagacattgctcccttgtagccaaaacctctagatgagatcgg |
36521208 |
T |
|
| Q |
118 |
gaaatgaataaaaggagtggtggcagggtctccatgccatgcatcagccatgagacactgtcgtttagttttctttctgaccattggattttttaaacat |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36521209 |
gaaatgaataaaaggagtggtggcggggtctccatgccatgcatcagccatgagacactgtcgtttagttttctttctgaccattggatttgttaaacat |
36521308 |
T |
|
| Q |
218 |
caaaatccagtgatgacttcctcaatgttgagcttgtttgcatgggccctacctcgtgcccttctggataaatgattaatttgaattttggatgtagtac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36521309 |
caaaatccagtgatgacttcctcaatgttgagcttgcttgcatgggccctacctcgtgcccttctggataaatgattaattggaattttggatgtagtac |
36521408 |
T |
|
| Q |
318 |
actacaatgtttttaaggtaaactctttagtaatgaaaagaattttatcagcttataagggtaaatattggacgtcattgtattcatattgtggtcacta |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36521409 |
actacaatgtttttaaggtaaactctttagtaatgaaaagaattttatcagcttataagggtaaatattggtcgtcattgtattcatattgtggtcacta |
36521508 |
T |
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| Q |
418 |
ataaattctttttcatcatcaaatagtataccaaatgtatgacatggtaaaagaatgaaatcataatttttatcaagtacgaatcaaacacataatagaa |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36521509 |
ataaattctttttcatcatcaaatagtataccaaatgtatgacatggtaaaagaatgaaatcataatttttatcaagtacgaatcaaacacataatataa |
36521608 |
T |
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| Q |
518 |
tttatatcataatat |
532 |
Q |
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||||||||||||||| |
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| T |
36521609 |
tttatatcataatat |
36521623 |
T |
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