View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2889_low_10 (Length: 362)
Name: NF2889_low_10
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2889_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 9 - 345
Target Start/End: Complemental strand, 39779928 - 39779593
Alignment:
| Q |
9 |
gtgagaagaatagttatagttactctataaaatcaagattgacctttcattatctccttgattaccacttttctctcttacacaaaatcaagattgaaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779928 |
gtgagaagaatagttatagttactctataaa-tcaagattgacctttcattatctccttgattaccacttttctctcttacacaaaatcaagattgaaaa |
39779830 |
T |
|
| Q |
109 |
agaaaatgataacactttatttcatactctggacaagaaagacactatacatatatcaaacaagtatgcacttttcagctcaagatcataccttgatcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779829 |
agaaaatgataacactttatttcatactctggacaagaaagacactatacatatatcaaacaagtatgcacttttcagctcaagatcataccttgatcaa |
39779730 |
T |
|
| Q |
209 |
taatgagagtgggaatttcgtttttgtcttccttcttcttctccaaagaattctcaagagtaaaagagggaaatattgctagttgtactgtaacacaaag |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39779729 |
taatgagagtgggaatttcgtttttgtcttccttcttcttctccaaagaattctcaagagtaaaagagggaaatattgctaattgtactgtaacacaaag |
39779630 |
T |
|
| Q |
309 |
gagaataatgtaaataagaatatgatgataaaaatat |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39779629 |
gagaataatgtaaataagaatatgatgataaaaatat |
39779593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University