View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2889_low_11 (Length: 339)

Name: NF2889_low_11
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2889_low_11
NF2889_low_11
[»] chr4 (3 HSPs)
chr4 (1-189)||(25506211-25506399)
chr4 (1-154)||(25871125-25871273)
chr4 (1-154)||(16748840-16748986)
[»] chr6 (3 HSPs)
chr6 (1-188)||(31121100-31121287)
chr6 (200-324)||(26838776-26838900)
chr6 (111-155)||(35241096-35241140)
[»] chr7 (1 HSPs)
chr7 (200-324)||(30684301-30684424)
[»] chr3 (2 HSPs)
chr3 (78-191)||(40396829-40396942)
chr3 (200-325)||(35906163-35906289)
[»] chr5 (3 HSPs)
chr5 (78-189)||(14591817-14591928)
chr5 (73-190)||(30917461-30917578)
chr5 (78-171)||(19828624-19828717)
[»] chr1 (1 HSPs)
chr1 (78-154)||(50052794-50052870)
[»] chr2 (1 HSPs)
chr2 (62-128)||(13007956-13008022)
[»] chr8 (1 HSPs)
chr8 (115-155)||(14112521-14112561)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 25506399 - 25506211
Alignment:
Q  1 aagatgaagaagtttctattatttctacgggaagccggaacgtgaaaagggagggagggaaatgaaaatgacacattaaaatgaatgaagggctgagatt 100  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25506399 aagatgaagaggtttctattatttctacgggaagccagaacgtgaaaagggaaggagggaaatgaaaatgacacattaaaatgaatgaagggctgagatt 25506300  T
Q  101 aattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactgaaggaaatttccactggagtggatcctctccc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  25506299 aattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggaggaaattttcactggagtggatcctctccc 25506211  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 25871273 - 25871125
Alignment:
Q  1 aagatgaagaagtttctattatttctacgggaagccggaacgtgaaaagggagggagggaaatgaaaatgacacattaaaatgaatgaagggctgagatt 100  Q
    |||||||||  ||||||||||||||||| | ||||| ||||||||||||||||  |    ||||||||||||||||| ||||||||||| ||||||||||    
T  25871273 aagatgaagttgtttctattatttctacag-aagccagaacgtgaaaagggagaaa----aatgaaaatgacacattgaaatgaatgaaaggctgagatt 25871179  T
Q  101 aattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaa 154  Q
    | ||||||| |||||||||| ||||||||| |||||||  ||||||||||||||    
T  25871178 agttaaggtgtcattaaaaggaatggacggttaagattatttcacaggagaaaa 25871125  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 16748986 - 16748840
Alignment:
Q  1 aagatgaagaagtttctattatttctacgggaagccggaacgtgaaaagggagggagggaaatgaaaatgacacattaaaatgaatgaagggctgagatt 100  Q
    |||||||||  |||||||||||||||||   ||||| ||||||||||||||||  |    ||||||||||||||||| ||||||||||| | ||||||||    
T  16748986 aagatgaagttgtttctattatttctac---aagccagaacgtgaaaagggagaaa----aatgaaaatgacacattgaaatgaatgaaagactgagatt 16748894  T
Q  101 aattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaa 154  Q
    | ||||||| |||||||||  |||||||| ||||||||  ||||||||||||||    
T  16748893 agttaaggtgtcattaaaaagaatggacgactaagattatttcacaggagaaaa 16748840  T

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Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 31121100 - 31121287
Alignment:
Q  1 aagatgaagaagtttctattatttctacgggaagccggaacgtgaaaagggagggagggaaatgaaaatgacacattaaaatgaatgaagggctgagatt 100  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31121100 aagatgaagaggtttctattatttctaagggaagccagaacgtgaaaagggaggaagggaaatgaaaatgacacattaaaatgaatgaagggctgagatt 31121199  T
Q  101 aattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactgaaggaaatttccactggagtggatcctctcc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  31121200 aattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggaggaaatttccactgaagtagatcctctcc 31121287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 200 - 324
Target Start/End: Original strand, 26838776 - 26838900
Alignment:
Q  200 ttcattaaacggtatcgtttaaacaatttttggttgcattagttgatacagttttcggcagttttattttaaattagtagggaaccgtgtgaacagtgtg 299  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| ||    
T  26838776 ttcattaaacggtatcgtttaaacaattttgggctgcattagttgatacagctttcgacagttttattttaaattagtaaggaaccgtgtgaacagtatg 26838875  T
Q  300 tagagcacagcatgtaagtattttc 324  Q
    |||||||||||||||||||||||||    
T  26838876 tagagcacagcatgtaagtattttc 26838900  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 35241096 - 35241140
Alignment:
Q  111 tcattaaaagaaatggacggctaagattgattcacaggagaaaac 155  Q
    ||||| ||||||||||| |||| |||||| |||||||||||||||    
T  35241096 tcattcaaagaaatggagggctcagattgcttcacaggagaaaac 35241140  T

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Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 200 - 324
Target Start/End: Original strand, 30684301 - 30684424
Alignment:
Q  200 ttcattaaacggtatcgtttaaacaatttttggttgcattagttgatacagttttcggcagttttattttaaattagtagggaaccgtgtgaacagtgtg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30684301 ttcattaaacggtatcgtttaaacaatttttggttgcattagttgatacagttttcggcagttttattttaaattagtagggaaccgtgtgaacagtgtg 30684400  T
Q  300 tagagcacagcatgtaagtattttc 324  Q
    |||| |||| |||||||||||||||    
T  30684401 taga-cacatcatgtaagtattttc 30684424  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 40396829 - 40396942
Alignment:
Q  78 aaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactgaaggaaatttccactggagt 177  Q
    |||||||||||||| || |||||||||||| | |||||||||| |||||| ||||||||||  ||||||||||||||| | || ||||||||||||||||    
T  40396829 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggagaaaatttccactggagt 40396928  T
Q  178 ggatcctctcccca 191  Q
    ||||||||||||||    
T  40396929 ggatcctctcccca 40396942  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 35906289 - 35906163
Alignment:
Q  200 ttcattaaacggtatcgtttaaacaatttttggttgcattagttgatacagttttcggcagtttta-ttttaaattagtagggaaccgtgtgaacagtgt 298  Q
    |||||||||||| ||| |||||||||||| ||| ||||||| |||||||| ||||||||||||||| ||||| ||||||| || ||| ||||||||||||    
T  35906289 ttcattaaacggaatcatttaaacaatttatggatgcattacttgatacaattttcggcagttttatttttatattagtaaggcaccatgtgaacagtgt 35906190  T
Q  299 gtagagcacagcatgtaagtattttct 325  Q
    ||| |||| | ||||| ||||||||||    
T  35906189 gtaaagcaaaacatgttagtattttct 35906163  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 14591928 - 14591817
Alignment:
Q  78 aaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactgaaggaaatttccactggagt 177  Q
    ||||||||||||||||| ||||| ||| || | |||||||||| |||||| ||||||||||  ||||||||||||||| | |||||||||||||||||||    
T  14591928 aaaatgaatgaagggctaagatttattcagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggaggaaatttccactggagt 14591829  T
Q  178 ggatcctctccc 189  Q
    ||||||||||||    
T  14591828 ggatcctctccc 14591817  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 30917461 - 30917578
Alignment:
Q  73 acattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactgaaggaaatttccact 172  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||||||  |||||  |||||||  | || |||||||||||    
T  30917461 acattaaaatgaatgaagggttaagattaattaagatgtcattaaaagaaatggacggctaagattatttcactcgagaaaataggagaaaatttccact 30917560  T
Q  173 ggagtggatcctctcccc 190  Q
     |||||||||||||||||    
T  30917561 agagtggatcctctcccc 30917578  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 19828717 - 19828624
Alignment:
Q  78 aaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactgaaggaaatttccac 171  Q
    ||||||||||||||||| | |||| ||||| | | |||||||   ||||||||||||||||  |||||||||||||||   |||||||||||||    
T  19828717 aaaatgaatgaagggctaaaattagttaagatgttattaaaatggatggacggctaagattatttcacaggagaaaacatgaggaaatttccac 19828624  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 50052870 - 50052794
Alignment:
Q  78 aaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaa 154  Q
    |||||||||||||| || |||||||||||| | |||||||||| |||||| |||| |||||  ||||||||||||||    
T  50052870 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctgagattatttcacaggagaaaa 50052794  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 13007956 - 13008022
Alignment:
Q  62 atgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggac 128  Q
    |||| |||||||| ||||||||||||||||||| |||| | ||||||| |||||||||| |||||||    
T  13007956 atgacaatgacacgttaaaatgaatgaagggctaagatcagttaaggtgtcattaaaaggaatggac 13008022  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 14112521 - 14112561
Alignment:
Q  115 taaaagaaatggacggctaagattgattcacaggagaaaac 155  Q
    ||||||||||||| |||| |||||| |||||||||||||||    
T  14112521 taaaagaaatggagggctcagattgcttcacaggagaaaac 14112561  T

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