View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2889_low_18 (Length: 249)

Name: NF2889_low_18
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2889_low_18
NF2889_low_18
[»] chr1 (6 HSPs)
chr1 (1-236)||(13879251-13879486)
chr1 (177-232)||(4038892-4038947)
chr1 (176-232)||(30157913-30157969)
chr1 (200-236)||(30143267-30143303)
chr1 (110-152)||(30143494-30143536)
chr1 (110-142)||(49266401-49266433)
[»] chr7 (5 HSPs)
chr7 (176-232)||(10271190-10271246)
chr7 (176-232)||(11320199-11320255)
chr7 (110-142)||(10271343-10271375)
chr7 (110-142)||(11320417-11320449)
chr7 (110-142)||(25801025-25801057)
[»] chr3 (3 HSPs)
chr3 (176-236)||(13474196-13474256)
chr3 (176-232)||(3421748-3421804)
chr3 (110-152)||(13473867-13473909)
[»] chr8 (1 HSPs)
chr8 (176-232)||(24410872-24410928)
[»] chr4 (2 HSPs)
chr4 (176-232)||(10728035-10728091)
chr4 (176-232)||(10941804-10941860)
[»] chr6 (1 HSPs)
chr6 (110-151)||(10928971-10929012)
[»] chr5 (3 HSPs)
chr5 (110-151)||(3159607-3159648)
chr5 (110-151)||(38937987-38938028)
chr5 (110-146)||(28604876-28604912)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13879251 - 13879486
Alignment:
Q  1 tagcatatgactacaaggttttaaataacggtcacggtcaagatcgcatatttcacaattaaggtttgtgatacagattgcggttgtcgcggtgtgaaaa 100  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879251 tagcatatgatttcaaggttttaaataacggtcgcggtcaagatcgcatatttcacaattaaggtttgtgatacagattgcggttgtcgcggtgtgaaaa 13879350  T
Q  101 gtaagtatgtaaaccagcaaagtcaaataatctataaaattatttgactttactgaattattttatggattaatctaaaggcaatatatcttcagcaacg 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879351 gtaagtatgtaaactagcaaagtcaaataatctataaaattatttgactttactgaattattttatggattaatctaaaggcaatatatcttcagcaacg 13879450  T
Q  201 tatgtaacgtcggtgccgatgatgacattgaaccct 236  Q
    |||||||||||||||| |||||||||||||||||||    
T  13879451 tatgtaacgtcggtgctgatgatgacattgaaccct 13879486  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 4038947 - 4038892
Alignment:
Q  177 aaaggcaatatatcttcagcaacgtatgtaacgtcggtgccgatgatgacattgaa 232  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  4038947 aaaggcaatatagcttcagcaacgtatgtaacgtcagtgccgatgatgacattgaa 4038892  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 30157969 - 30157913
Alignment:
Q  176 taaaggcaatatatcttcagcaacgtatgtaacgtcggtgccgatgatgacattgaa 232  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  30157969 taaaggcaatatagcttcaacaacgtatgtaatgtcggtgccgatgatgacattgaa 30157913  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 30143303 - 30143267
Alignment:
Q  200 gtatgtaacgtcggtgccgatgatgacattgaaccct 236  Q
    |||||||||||||||||||||||||||||||||||||    
T  30143303 gtatgtaacgtcggtgccgatgatgacattgaaccct 30143267  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 30143494 - 30143536
Alignment:
Q  110 taaaccagcaaagtcaaataatctataaaattatttgacttta 152  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  30143494 taaaccagcaaagtcaaataatccataaaattaattgacttta 30143536  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 49266433 - 49266401
Alignment:
Q  110 taaaccagcaaagtcaaataatctataaaatta 142  Q
    ||||||||||||||||||||||| |||||||||    
T  49266433 taaaccagcaaagtcaaataatccataaaatta 49266401  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 10271246 - 10271190
Alignment:
Q  176 taaaggcaatatatcttcagcaacgtatgtaacgtcggtgccgatgatgacattgaa 232  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  10271246 taaaggcaatatagcttcatcaacgtatgtaacgtcggtgccgatgatgacattgaa 10271190  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 11320255 - 11320199
Alignment:
Q  176 taaaggcaatatatcttcagcaacgtatgtaacgtcggtgccgatgatgacattgaa 232  Q
    ||||| || |||| ||||||||| || ||||| ||||||||||||||||||||||||    
T  11320255 taaagacattatagcttcagcaaagtttgtaatgtcggtgccgatgatgacattgaa 11320199  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 10271343 - 10271375
Alignment:
Q  110 taaaccagcaaagtcaaataatctataaaatta 142  Q
    |||||||||||||||||||||| ||||||||||    
T  10271343 taaaccagcaaagtcaaataatatataaaatta 10271375  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 11320417 - 11320449
Alignment:
Q  110 taaaccagcaaagtcaaataatctataaaatta 142  Q
    ||||||||||||||||||||||| |||||||||    
T  11320417 taaaccagcaaagtcaaataatccataaaatta 11320449  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 25801025 - 25801057
Alignment:
Q  110 taaaccagcaaagtcaaataatctataaaatta 142  Q
    |||||||||||||||||||||||| ||||||||    
T  25801025 taaaccagcaaagtcaaataatctttaaaatta 25801057  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 13474196 - 13474256
Alignment:
Q  176 taaaggcaatatatcttcagcaacgtatgtaacgtcggtgccgatgatgacattgaaccct 236  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||    
T  13474196 taaaggcaatatagcttcagcaacgtatgtaacgtcgatgtcgatgatgacattgaaccct 13474256  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 3421804 - 3421748
Alignment:
Q  176 taaaggcaatatatcttcagcaacgtatgtaacgtcggtgccgatgatgacattgaa 232  Q
    |||| |||||||| ||||| | ||||||||||||||||||| |||||||||||||||    
T  3421804 taaaagcaatatagcttcaaccacgtatgtaacgtcggtgctgatgatgacattgaa 3421748  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 13473909 - 13473867
Alignment:
Q  110 taaaccagcaaagtcaaataatctataaaattatttgacttta 152  Q
    ||||||||||||||||||||||| ||||||||| | |||||||    
T  13473909 taaaccagcaaagtcaaataatccataaaattaatcgacttta 13473867  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 24410872 - 24410928
Alignment:
Q  176 taaaggcaatatatcttcagcaacgtatgtaacgtcggtgccgatgatgacattgaa 232  Q
    ||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||    
T  24410872 taaaggcaatatagcttcaacaacgtatgcaacctcggtgccgatgatgacattgaa 24410928  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 10728035 - 10728091
Alignment:
Q  176 taaaggcaatatatcttcagcaacgtatgtaacgtcggtgccgatgatgacattgaa 232  Q
    |||||| ||| ||| |||| |||||||||||| ||||||||||||||||||||||||    
T  10728035 taaaggtaatgtattttcaacaacgtatgtaaggtcggtgccgatgatgacattgaa 10728091  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 10941804 - 10941860
Alignment:
Q  176 taaaggcaatatatcttcagcaacgtatgtaacgtcggtgccgatgatgacattgaa 232  Q
    |||||| ||| ||| |||| |||||||||||| ||||||||||||||||||||||||    
T  10941804 taaaggtaatgtattttcaacaacgtatgtaaggtcggtgccgatgatgacattgaa 10941860  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 10929012 - 10928971
Alignment:
Q  110 taaaccagcaaagtcaaataatctataaaattatttgacttt 151  Q
    ||||||||||||||||||||||| ||||||||| | ||||||    
T  10929012 taaaccagcaaagtcaaataatccataaaattaatcgacttt 10928971  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 3159607 - 3159648
Alignment:
Q  110 taaaccagcaaagtcaaataatctataaaattatttgacttt 151  Q
    ||||||||||||||||||||||| ||||||||| | ||||||    
T  3159607 taaaccagcaaagtcaaataatccataaaattaatcgacttt 3159648  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 38937987 - 38938028
Alignment:
Q  110 taaaccagcaaagtcaaataatctataaaattatttgacttt 151  Q
    ||||||||||||||||||||||| ||||||||| | ||||||    
T  38937987 taaaccagcaaagtcaaataatccataaaattaatcgacttt 38938028  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 28604912 - 28604876
Alignment:
Q  110 taaaccagcaaagtcaaataatctataaaattatttg 146  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  28604912 taaaccagcaaagtcaaataatccataaaatcatttg 28604876  T

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