View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2889_low_2 (Length: 604)

Name: NF2889_low_2
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2889_low_2
NF2889_low_2
[»] chr6 (1 HSPs)
chr6 (78-274)||(664194-664390)
[»] chr1 (2 HSPs)
chr1 (484-549)||(38709328-38709393)
chr1 (361-415)||(38709204-38709258)
[»] chr5 (2 HSPs)
chr5 (491-541)||(39368219-39368269)
chr5 (376-404)||(29685002-29685030)
[»] chr8 (2 HSPs)
chr8 (484-535)||(1578157-1578208)
chr8 (484-543)||(8045032-8045091)
[»] chr7 (1 HSPs)
chr7 (491-534)||(2569582-2569625)
[»] chr4 (1 HSPs)
chr4 (492-535)||(26500870-26500913)
[»] chr3 (1 HSPs)
chr3 (506-543)||(17332927-17332964)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 78 - 274
Target Start/End: Complemental strand, 664390 - 664194
Alignment:
Q  78 ttgttgttgttacagttcgaaaaagacctaattacgatggatggtttcacggattcttagatgttggagctgtagctactcagcataacggtgaagacgt 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  664390 ttgttgttgttacagttcgaaaaagacctaattacgatggatggtttcacggattcttagatgttggagctgtagctactcagcataacggtgaagacgt 664291  T
Q  178 tgttcctcttgctctttcgttcgctaaggtgtgaaagattcgattttgattatacccttttgtttttatgcagaaaatatcatgtgggtcacccttg 274  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  664290 tgttcctcttgcgctttcgttcgctaaggtttgaaagattcgattttgattatacccttttgtttttatgcagaaaatatcatgcgggtcacccttg 664194  T

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Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 484 - 549
Target Start/End: Original strand, 38709328 - 38709393
Alignment:
Q  484 caagggactaggatcgaggctgtttagatctccctcagcctcttggtggttctctgttcaactgtc 549  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38709328 caagggactagggtcgaggctgtttagatctccctcagcctcttggtggttctctgttcaactgtc 38709393  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 38709204 - 38709258
Alignment:
Q  361 gttcgtgtctactggttgtcgtgtttaggagctccggatcttctatgtgctcagc 415  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||||||||    
T  38709204 gttcgtgtctgccggttgtcgtgtttaggagctccggatcttctctgtgctcagc 38709258  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 491 - 541
Target Start/End: Original strand, 39368219 - 39368269
Alignment:
Q  491 ctaggatcgaggctgtttagatctccctcagcctcttggtggttctctgtt 541  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39368219 ctagggtcgaggctgtttagatctccctcagcctcttggtggttctctgtt 39368269  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 29685002 - 29685030
Alignment:
Q  376 ttgtcgtgtttaggagctccggatcttct 404  Q
    |||||||||||||||||||||||||||||    
T  29685002 ttgtcgtgtttaggagctccggatcttct 29685030  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 535
Target Start/End: Original strand, 1578157 - 1578208
Alignment:
Q  484 caagggactaggatcgaggctgtttagatctccctcagcctcttggtggttc 535  Q
    |||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  1578157 caagggactagggtcgaggctggttagatctccctcagccttttggtggttc 1578208  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 543
Target Start/End: Complemental strand, 8045091 - 8045032
Alignment:
Q  484 caagggactaggatcgaggctgtttagatctccctcagcctcttggtggttctctgttca 543  Q
    |||||||||||| |||||| |||||||||||||||| | |||||| ||||||| ||||||    
T  8045091 caagggactagggtcgaggttgtttagatctccctccgtctcttgatggttctatgttca 8045032  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 491 - 534
Target Start/End: Original strand, 2569582 - 2569625
Alignment:
Q  491 ctaggatcgaggctgtttagatctccctcagcctcttggtggtt 534  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  2569582 ctagggtcgagactgtttagatctccctcagcctcttggtggtt 2569625  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 535
Target Start/End: Complemental strand, 26500913 - 26500870
Alignment:
Q  492 taggatcgaggctgtttagatctccctcagcctcttggtggttc 535  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||    
T  26500913 tagggtcgaggctgtctagatctccctcagccttttggtggttc 26500870  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 17332964 - 17332927
Alignment:
Q  506 tttagatctccctcagcctcttggtggttctctgttca 543  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  17332964 tttagatctccctcatcctcttggtggttctctattca 17332927  T

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