View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2889_low_4 (Length: 530)
Name: NF2889_low_4
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2889_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 80 - 318
Target Start/End: Complemental strand, 44258141 - 44257910
Alignment:
| Q |
80 |
gcaaccatttttcctgttcgtctagaccgaagttccaattatgatgaccatttatgtagtgcattcttttgcttgatttggttttatgtgagaa-----t |
174 |
Q |
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| T |
44258141 |
gcaactatttttcctgttcggctagaccaaagttccaattatgatgaccatttatgtagtgctttc---------atttggttttatgtgagcacattat |
44258051 |
T |
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| Q |
175 |
attgatgtgtgctctgctgcatctttatcttatttccttgatgctgatcacctgtctcttctgacaaaagttcatgatgagtttttggacttgtgataat |
274 |
Q |
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| T |
44258050 |
attgatgtgtgctccgctgcatctttatcttatttccttgatgctga---cctgtctcttctggcataagttcatgatgagtttttggacttgtgataat |
44257954 |
T |
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| Q |
275 |
tcatgatttagcttgaagaaacagactacaggtgctttctgaac |
318 |
Q |
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| T |
44257953 |
tcatgatttagcttgaagaaacagactacaagtgctttctgaac |
44257910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 101 - 320
Target Start/End: Complemental strand, 44260504 - 44260289
Alignment:
| Q |
101 |
ctagaccgaagttccaattatgatgaccatttatgtagtgcattcttttgcttgatttggttttatgtgagaatattgatgtgtgctctgctgcatcttt |
200 |
Q |
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| T |
44260504 |
ctagaccaaagttccgattat-atcgccatttatgttgtgcattcatctgcttgatttggttttatgtgaaaacattgatgtgcgctctgctgcatcttt |
44260406 |
T |
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| Q |
201 |
atcttatttccttgatgctgatcacctgtctcttctgacaaaagttcatgatgagtttttggacttgtgataattcatgatttagcttgaagaaacagac |
300 |
Q |
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| T |
44260405 |
ttcttagttccttgatgctg---acctatcttttctgacataaatacatggtgtgttattgaacttgtgatatttcatgatttagcctgaagaaacagac |
44260309 |
T |
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| Q |
301 |
tacaggtgctttctgaacaa |
320 |
Q |
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| T |
44260308 |
tacaggtgctttctgaacaa |
44260289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 348 - 513
Target Start/End: Complemental strand, 44257914 - 44257744
Alignment:
| Q |
348 |
tgaaccgtgtatctgattgatttgtgtctaatcatgctgttaag----tatatgtgccttattgcatgttta-----ctaccccaaatttgaacaagcta |
438 |
Q |
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| T |
44257914 |
tgaaccatgtatctgattgatttgtgtcttatcatgctagcaaggatatatatgtgccttattgcatgtttagtttactaccccaaatttgaacaag--- |
44257818 |
T |
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| Q |
439 |
gttattgcattgtgcagatactgccaagagtactcgacacgaataacaagatattgtcaatgtagatgcatggaa |
513 |
Q |
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| T |
44257817 |
-ttgttgcattctgcagatactgccaagagtactcgacacgaataataagatattgtcaatgtagatgcatggaa |
44257744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 44258273 - 44258206
Alignment:
| Q |
11 |
caaaggacaaaaggaaggaaaaaactatcttgaaaaaatgtcatatttaagtgtactgcagctgaata |
78 |
Q |
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| T |
44258273 |
caaaggacaaaaagaaggaaaaaactatcttgaaaaaatgtcatatttaagtgtactgcagctgaata |
44258206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 44280278 - 44280197
Alignment:
| Q |
101 |
ctagaccgaagttccaattatgatgaccatttatgtagtgcattcttttgcttgatttggttttatgtgagaatattgatgt |
182 |
Q |
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| T |
44280278 |
ctagaccaaagttccaactatgatggccatttatgttgtgcattcttctgcttgatttggttttatgtgaaaacattgatgt |
44280197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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