View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2889_low_5 (Length: 511)

Name: NF2889_low_5
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2889_low_5
NF2889_low_5
[»] chr4 (4 HSPs)
chr4 (18-214)||(14135623-14135819)
chr4 (342-423)||(14135414-14135495)
chr4 (18-98)||(35781873-35781952)
chr4 (472-503)||(14135334-14135365)
[»] chr2 (4 HSPs)
chr2 (18-135)||(15262854-15262971)
chr2 (18-98)||(39266120-39266199)
chr2 (18-100)||(1344535-1344615)
chr2 (18-70)||(33912276-33912328)
[»] chr7 (2 HSPs)
chr7 (342-422)||(33819674-33819754)
chr7 (17-76)||(33819798-33819857)
[»] chr3 (2 HSPs)
chr3 (18-96)||(9260727-9260804)
chr3 (19-98)||(11089927-11090005)
[»] scaffold0667 (1 HSPs)
scaffold0667 (18-98)||(625-704)
[»] chr8 (1 HSPs)
chr8 (18-98)||(23585361-23585440)
[»] chr1 (2 HSPs)
chr1 (18-98)||(30951417-30951496)
chr1 (32-72)||(12855263-12855303)
[»] chr6 (2 HSPs)
chr6 (18-97)||(10099120-10099198)
chr6 (18-95)||(4890653-4890730)
[»] chr5 (1 HSPs)
chr5 (18-68)||(41842453-41842503)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 14135819 - 14135623
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacctgtcaggtaataaaatgaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14135819 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacctgtcaggtaataaaatgaaa 14135720  T
Q  118 tcctaattttgccctcacccttatcctctctacatcgatgtcttcctctcatcttcttcttcctcttgttgatgccatatgtactgtattctctgtc 214  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14135719 tcctaatttttccctcacccttatcctctctacatcgatgtcttcctctcatcttcttcttcctcttgttgatgccatatgtactgtattctctgtc 14135623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 14135495 - 14135414
Alignment:
Q  342 gaattccccttcaaatcatctttttgaaacgatttgagttctgttgaattcatttttgttttgtttaaaattcaattcctca 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14135495 gaattccccttcaaatcatctttttgaaacgatttgagttctgttgaattcatttttgttttgtttaaaattcaattcctca 14135414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 35781952 - 35781873
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacct 98  Q
    ||||||||| ||| ||||||  |||| |||||||||||||||||||||||||| |  |||||| |||||||||||||||||    
T  35781952 aaattattcattttacttattttatcttatcactcctttgtattttctatcct-aaatttaggttgggttaaaattaacct 35781873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 503
Target Start/End: Complemental strand, 14135365 - 14135334
Alignment:
Q  472 ataaagattcctattggtgttgtttttcttct 503  Q
    ||||||||||||||||||||||||||||||||    
T  14135365 ataaagattcctattggtgttgtttttcttct 14135334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 15262971 - 15262854
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacctgtcaggtaata-aaatgaa 116  Q
    |||||||| |||| || ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||   | |||||||    
T  15262971 aaattatttcttttacctattatatcctatcactcctttgtattttctatcctgagtttta-gctgggttaaaattaacctatcaggtttgataaatgaa 15262873  T
Q  117 atcctaattttgccctcac 135  Q
    ||| | |||||||||||||    
T  15262872 atctttattttgccctcac 15262854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 39266120 - 39266199
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacct 98  Q
    ||||||||||||| ||||||| |||| ||||||||||||| |||||||||||| || |||| |||||||||||||||||||    
T  39266120 aaattattccttttacttatcttatcttatcactcctttgcattttctatcctaag-tttaagctgggttaaaattaacct 39266199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 1344535 - 1344615
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacctgt 100  Q
    |||| |||||||| || |||| ||||||||||| |||||||||||||||| || || |||||  |||||||||||||||||||    
T  1344535 aaatcattccttttacctatcctatcctatcacgcctttgtattttctat-ctaag-tttagattgggttaaaattaacctgt 1344615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 33912328 - 33912276
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcct 70  Q
    ||||||||||||| | ||||| ||||| ||||||||||| |||||||||||||    
T  33912328 aaattattccttttatttatcttatccaatcactcctttctattttctatcct 33912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 33819754 - 33819674
Alignment:
Q  342 gaattccccttcaaatcatctttttgaaacgatttgagttctgttgaattcatttttgttttgtttaaaattcaattcctc 422  Q
    ||||| |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  33819754 gaatttcccttcaattcatctttttgaaacgatttcagttcttttgaattcatttttgttttgtataaaattcaattcctc 33819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 33819857 - 33819798
Alignment:
Q  17 caaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttt 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||    
T  33819857 caaattattcctttaacttatcatatcctatcactcctttgtatttattaacctgagttt 33819798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 9260804 - 9260727
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaac 96  Q
    ||||||||| ||| ||||||||||||||||||||  ||||||||||||||||| || ||||||||| ||||||||||||    
T  9260804 aaattattcattttacttatcatatcctatcacttttttgtattttctatcctaag-tttaggctgtgttaaaattaac 9260727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 11090005 - 11089927
Alignment:
Q  19 aattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacct 98  Q
    ||||||| |||| |||||||||||||| ||| | |||||||  ||||||||| |  ||||||||| ||||||||||||||    
T  11090005 aattatttcttttacttatcatatcctttcaattctttgtaacttctatcct-aaatttaggctgagttaaaattaacct 11089927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 704 - 625
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacct 98  Q
    |||||| |||||| ||||||  |||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||    
T  704 aaattaatccttttacttattctatcatatcactcctttgtattttctattctaag-tttaggctgggttaaaattaacct 625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 23585361 - 23585440
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacct 98  Q
    |||||||| |||| ||||||| |||||||||||||  |||||||||||||||| || |||||| |||||||||||||||||    
T  23585361 aaattattacttttacttatcctatcctatcactcagttgtattttctatcctaag-tttaggttgggttaaaattaacct 23585440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 30951417 - 30951496
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacct 98  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| || |||| | | |||||||||||||||    
T  30951417 aaattattccttttacttatcatatgctatcgctcctttgtattttctatcctaag-tttaagttaggttaaaattaacct 30951496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 12855303 - 12855263
Alignment:
Q  32 acttatcatatcctatcactcctttgtattttctatcctga 72  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  12855303 acttatcatatcctattcatcctttgtattttctatcctga 12855263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 10099120 - 10099198
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacc 97  Q
    |||||||||| || |||||||||||| |||||||||||||||||||||||||| || ||||  |||| ||||||||||||    
T  10099120 aaattattccatttacttatcatatcttatcactcctttgtattttctatcctaag-tttaaactggattaaaattaacc 10099198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 4890730 - 4890653
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcac--tcctttgtattttctatcctgagttttaggctgggttaaaattaa 95  Q
    ||||||||||||  |||||||||||||||||||  || |||||||||||||||  |   |||||||||||||||||||||    
T  4890730 aaattattccttctacttatcatatcctatcacgatcttttgtattttctatc--ggcatttaggctgggttaaaattaa 4890653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 41842503 - 41842453
Alignment:
Q  18 aaattattcctttaacttatcatatcctatcactcctttgtattttctatc 68  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  41842503 aaattattccttttacttatactatcctatcactcctttgtattttctatc 41842453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University