View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2889_low_7 (Length: 438)

Name: NF2889_low_7
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2889_low_7
NF2889_low_7
[»] chr6 (31 HSPs)
chr6 (18-436)||(31284503-31284921)
chr6 (35-398)||(26729210-26729589)
chr6 (35-398)||(26623232-26623612)
chr6 (229-305)||(26623636-26623712)
chr6 (229-305)||(26729613-26729689)
chr6 (328-423)||(27214648-27214743)
chr6 (328-423)||(27234485-27234580)
chr6 (322-384)||(28234830-28234892)
chr6 (63-116)||(26647031-26647084)
chr6 (63-116)||(26752999-26753052)
chr6 (79-116)||(26802998-26803035)
chr6 (323-384)||(28181381-28181442)
chr6 (323-384)||(28227217-28227278)
chr6 (322-384)||(26937373-26937435)
chr6 (82-116)||(27610716-27610750)
chr6 (322-384)||(28185633-28185695)
chr6 (322-384)||(28297571-28297633)
chr6 (322-384)||(28325744-28325806)
chr6 (322-384)||(28514440-28514502)
chr6 (79-116)||(25539095-25539132)
chr6 (63-116)||(27592598-27592651)
chr6 (63-116)||(27604281-27604334)
chr6 (63-116)||(27677197-27677250)
chr6 (63-116)||(27679502-27679555)
chr6 (63-116)||(27705981-27706034)
chr6 (332-368)||(25580002-25580038)
chr6 (332-368)||(26056209-26056245)
chr6 (332-368)||(26076179-26076215)
chr6 (322-422)||(27337923-27338023)
chr6 (322-422)||(27398663-27398763)
chr6 (322-374)||(28098215-28098267)
[»] scaffold0038 (3 HSPs)
scaffold0038 (322-384)||(34992-35054)
scaffold0038 (323-384)||(27715-27776)
scaffold0038 (322-384)||(117059-117121)
[»] chr1 (1 HSPs)
chr1 (279-368)||(28127481-28127570)
[»] chr2 (1 HSPs)
chr2 (322-378)||(3279976-3280032)
[»] chr4 (4 HSPs)
chr4 (322-391)||(5090806-5090875)
chr4 (79-115)||(18679149-18679185)
chr4 (79-115)||(18723674-18723710)
chr4 (79-115)||(18731093-18731129)
[»] scaffold0019 (1 HSPs)
scaffold0019 (322-378)||(58140-58196)


Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 31284921 - 31284503
Alignment:
Q  18 acctctgactacaatcacttgacaagtctggtgtctgattaaaagctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31284921 acctctgactacaatcacttgacaagtctggtgtctgattaaaagctatcttcccagtaagcttgtattcatatctattcatgcccaacaagataagttg 31284822  T
Q  118 gtgaacaaatnnnnnnncaatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaataactagtatttgtttaaatatata 217  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31284821 gtgaacaaataaaaaaacaatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaataactaatatttgtttaaatatata 31284722  T
Q  218 aataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtaggctacccaggag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31284721 aataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagaaggctacccaggag 31284622  T
Q  318 aacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284621 aacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatg 31284522  T
Q  418 cttagcctatgcttctcca 436  Q
    ||||||| |||||||||||    
T  31284521 cttagccaatgcttctcca 31284503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 35 - 398
Target Start/End: Complemental strand, 26729589 - 26729210
Alignment:
Q  35 cttgacaagtctggtgtctgattaaaagctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagttggtgaacaaatnnnnnnn 134  Q
    |||||| |||| |||||||| | || || |||||||| || ||||||||||||||||||||| ||||| ||||||||   ||| || ||||||           
T  26729589 cttgacgagtccggtgtctggtcaagagttatcttcctagtaagcttgtattcatatctattaatgcc-aacaagat---ttgttgcacaaataaaaaaa 26729494  T
Q  135 caatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaa-taactagtatttgtttaaatatataaataaaaaat---gtt 230  Q
     |||||||| |||||||| || | ||| |||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||| |||||||   |||    
T  26729493 taatcacatttatatcttaacaattatgtcatacaattctaaatgttttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgtt 26729394  T
Q  231 tcccttttaagcatttatatggaatgattgaggaataaaaattgaagaa----------------ggcaaaacaagattgaagtgaagtaggctacccag 314  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||||||||                |||||||||||||||||||||||||||||||||||    
T  26729393 tcccttttaagcattaatatggaatgattggggaataagaattgaagaaataaagcatatatgaaggcaaaacaagattgaagtgaagtaggctacccag 26729294  T
Q  315 gagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattat 398  Q
    ||  ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| || ||||||||    
T  26729293 gatgacgatggtctccagacaagttagctgcttgtgcaagagctatcttccatttttgcaacctctccatattatatgtattat 26729210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 35 - 398
Target Start/End: Complemental strand, 26623612 - 26623232
Alignment:
Q  35 cttgacaagtctggtgtctgattaaaagctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagttggtgaacaaatnnnnnnn 134  Q
    |||||| |||| |||||||| | || || |||||||| || ||||||||||||||||||||| ||||| ||||||||   ||| || ||||||           
T  26623612 cttgacgagtccggtgtctggtcaagagttatcttcctagtaagcttgtattcatatctattaatgcc-aacaagat---ttgttgcacaaataaaaaaa 26623517  T
Q  135 c-aatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaa-taactagtatttgtttaaatatataaataaaaaat---gt 229  Q
      |||||||| |||||||| || | ||| |||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||| |||||||   ||    
T  26623516 ataatcacatttatatcttaacaattatgtcatacaattctaaatgttttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgt 26623417  T
Q  230 ttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaa----------------ggcaaaacaagattgaagtgaagtaggctaccca 313  Q
    |||||||||||||||| |||||||||||||| ||||||| ||||||||||                ||||||||||||||||||||||||||||||||||    
T  26623416 ttcccttttaagcattaatatggaatgattggggaataagaattgaagaaataaagcatatatgaaggcaaaacaagattgaagtgaagtaggctaccca 26623317  T
Q  314 ggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattat 398  Q
    |||  ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| || ||||||||    
T  26623316 ggatgacgatggtctccagacaagttagctgcttgtgcaagagctatcttccatttttgcaacctctccatattatatgtattat 26623232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 26623712 - 26623636
Alignment:
Q  229 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 305  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26623712 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26623636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 26729689 - 26729613
Alignment:
Q  229 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 305  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26729689 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26729613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 27214743 - 27214648
Alignment:
Q  328 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagc 423  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| ||||||||||||||||||||    
T  27214743 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagc 27214648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 27234485 - 27234580
Alignment:
Q  328 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagc 423  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| ||||||||||||||||||||    
T  27234485 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagc 27234580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 28234892 - 28234830
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 384  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| |||||    
T  28234892 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 28234830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 26647084 - 26647031
Alignment:
Q  63 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 116  Q
    |||||||||||  || |||||||||||||||||||||| || ||||||||||||    
T  26647084 ctatcttcccaataaacttgtattcatatctattcatgtcccacaagataagtt 26647031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 26753052 - 26752999
Alignment:
Q  63 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 116  Q
    |||||||||||  || |||||||||||||||||||||| || ||||||||||||    
T  26753052 ctatcttcccaataaacttgtattcatatctattcatgtcccacaagataagtt 26752999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 26803035 - 26802998
Alignment:
Q  79 cttgtattcatatctattcatgcccaacaagataagtt 116  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26803035 cttgtattcatatctattcatgtccaacaagataagtt 26802998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 28181442 - 28181381
Alignment:
Q  323 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 384  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28181442 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccat 28181381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 28227278 - 28227217
Alignment:
Q  323 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 384  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28227278 tggtggccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctatccat 28227217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 26937435 - 26937373
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 384  Q
    ||||| |||||||||||| || |||||  |||||||||||||||||||  ||||||| |||||    
T  26937435 atggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccat 26937373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 27610716 - 27610750
Alignment:
Q  82 gtattcatatctattcatgcccaacaagataagtt 116  Q
    |||||||||||||||||||||||| ||||||||||    
T  27610716 gtattcatatctattcatgcccaataagataagtt 27610750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 28185695 - 28185633
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 384  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28185695 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28185633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 28297571 - 28297633
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 384  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28297571 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28297633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 28325806 - 28325744
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 384  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28325806 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 28325744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 28514502 - 28514440
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 384  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28514502 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28514440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 25539132 - 25539095
Alignment:
Q  79 cttgtattcatatctattcatgcccaacaagataagtt 116  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  25539132 cttgtattcatatctattcatgtccaataagataagtt 25539095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 27592598 - 27592651
Alignment:
Q  63 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 116  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27592598 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27592651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 27604281 - 27604334
Alignment:
Q  63 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 116  Q
    ||||||| |||  ||||| ||||||||||||||||||| |||| ||||||||||    
T  27604281 ctatctttccaataagctcgtattcatatctattcatgtccaataagataagtt 27604334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 27677197 - 27677250
Alignment:
Q  63 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 116  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27677197 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27677250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 27679555 - 27679502
Alignment:
Q  63 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 116  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27679555 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27679502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 27705981 - 27706034
Alignment:
Q  63 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 116  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27705981 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27706034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 25580038 - 25580002
Alignment:
Q  332 gacaagttagctgcttgagtaagagctatcttccatt 368  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  25580038 gacaagttagcagcttgggtaagagctatcttccatt 25580002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 26056245 - 26056209
Alignment:
Q  332 gacaagttagctgcttgagtaagagctatcttccatt 368  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26056245 gacaagttagcagcttgagtaagagccatcttccatt 26056209  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 26076215 - 26076179
Alignment:
Q  332 gacaagttagctgcttgagtaagagctatcttccatt 368  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26076215 gacaagttagcagcttgagtaagagccatcttccatt 26076179  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 422
Target Start/End: Original strand, 27337923 - 27338023
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 421  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27337923 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27338022  T
Q  422 g 422  Q
    |    
T  27338023 g 27338023  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 422
Target Start/End: Original strand, 27398663 - 27398763
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 421  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27398663 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27398762  T
Q  422 g 422  Q
    |    
T  27398763 g 27398763  T

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Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 28098215 - 28098267
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgca 374  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||    
T  28098215 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgca 28098267  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 35054 - 34992
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 384  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| |||||    
T  35054 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 34992  T

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Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 27776 - 27715
Alignment:
Q  323 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 384  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  27776 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccat 27715  T

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Target: scaffold0038; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 117121 - 117059
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 384  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  117121 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 117059  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 368
Target Start/End: Original strand, 28127481 - 28127570
Alignment:
Q  279 aggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatt 368  Q
    ||||||||||||||| ||||  |||||| ||||| |||  |  ||||| ||| ||||||||||| ||||| || ||||||||||||||||    
T  28127481 aggcaaaacaagatttaagtatagtagggtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccatt 28127570  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 3280032 - 3279976
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 378  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  3280032 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacct 3279976  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 391
Target Start/End: Original strand, 5090806 - 5090875
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatct 391  Q
    ||||| ||||||||| |||||||||||  ||||||| |||| |||||| |||||| | ||||||| ||||    
T  5090806 atggtagccagacaaattagctgcttgcttaagagccatctcccatttctgcaacttctccatattatct 5090875  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 18679149 - 18679185
Alignment:
Q  79 cttgtattcatatctattcatgcccaacaagataagt 115  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18679149 cttgtattcatatctattcatgtccaataagataagt 18679185  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 18723674 - 18723710
Alignment:
Q  79 cttgtattcatatctattcatgcccaacaagataagt 115  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18723674 cttgtattcatatctattcatgtccaataagataagt 18723710  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 18731093 - 18731129
Alignment:
Q  79 cttgtattcatatctattcatgcccaacaagataagt 115  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18731093 cttgtattcatatctattcatgtccaataagataagt 18731129  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 58140 - 58196
Alignment:
Q  322 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 378  Q
    ||||| |||||| |||||||| |  |||||||||||| |||||||||| ||||||||    
T  58140 atggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacct 58196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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