View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2889_low_8 (Length: 435)
Name: NF2889_low_8
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2889_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 34505009 - 34505417
Alignment:
| Q |
11 |
cagagacaatgtagttgtcttcgatcctaacgttcgtagatgaatctgttaagaaggcgaaaaatgggaaaatcaagcagtggttagtaatacagtacat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34505009 |
cagagacaatgtagttgtcttcgatcctaacgttcgtagatgaatctgttaagaaggcgaaaaatggaaaaatcaagcagtggttagtaatacagtacat |
34505108 |
T |
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| Q |
111 |
gtaaattgtaattgtacagtttttaatatgaatatcataatttcaattacttaaagctaaataaatacaatctataaacataaagtacgaagcaaacaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34505109 |
gtaaattgtaattgtacagtttttaatatgaatatcataatttcaattacttaaagctaaataaatacaatctataaacataaagtacgaagcaaacaaa |
34505208 |
T |
|
| Q |
211 |
ttttatgtcattgttagatacaaatagagtatatcttgtatctcaannnnnnnaaatactcatgtgaatattatggaataaattattacctgggtctatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34505209 |
ttttatgtcattgttagatacaaatagagtatatcttgtatctcaatttttttaaatactcatgtgattattatggaataaattattacctgggtctatt |
34505308 |
T |
|
| Q |
311 |
ccatctgtgtttggagagtctactggtgcaagaatggtaagaccctttataattatgttactgaagaaataaagcttgatcaaaataatgaaatattgta |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34505309 |
ccatctgtgtttggagagtctactggtgcaagaatggtaagaccctttataattatgttactgaagaaataaagcttgatcaaaagaatgaaatattgta |
34505408 |
T |
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| Q |
411 |
tgtataaag |
419 |
Q |
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||||||||| |
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| T |
34505409 |
tgtataaag |
34505417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 297 - 392
Target Start/End: Original strand, 45078620 - 45078715
Alignment:
| Q |
297 |
tacctgggtctattccatctgtgtttggagagtctactggtgcaagaatggtaagaccctttataattatgttactgaagaaataaagcttgatca |
392 |
Q |
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| T |
45078620 |
tacctgggtttattccatctgtgtttggagagtctactggtgcaagaatggtaagtccatttataattatgttactgcagaaatgaagcttgatca |
45078715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 45082923 - 45083033
Alignment:
| Q |
295 |
attacctgggtctattccatctgtgtttggagagtctactggtgcaagaatggtaagaccctttataattatgttactgaagaaataaagcttgatcaaa |
394 |
Q |
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| T |
45082923 |
attacctgggtctatgccatctgtgtttggaacgtccactggtgcaagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcaga |
45083022 |
T |
|
| Q |
395 |
ataatgaaata |
405 |
Q |
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| T |
45083023 |
agaatgaaata |
45083033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 384
Target Start/End: Original strand, 45067901 - 45067990
Alignment:
| Q |
295 |
attacctgggtctattccatctgtgtttggagagtctactggtgcaagaatggtaagaccctttataattatgttactgaagaaataaag |
384 |
Q |
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|||||| |||||||| ||||||||||||||| ||| |||||||||||||| ||||| | |||||||||||||||||||||| |||||| |
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| T |
45067901 |
attaccagggtctatgccatctgtgtttggaacgtccactggtgcaagaatagtaagtctatttataattatgttactgaagatataaag |
45067990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 45075500 - 45075582
Alignment:
| Q |
296 |
ttacctgggtctattccatctgtgtttggagagtctactggtgcaagaatggtaagaccctttataattatgttactgaagaa |
378 |
Q |
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| T |
45075500 |
ttacctgggtctatgccatccgtgttaggaatgtcgactggtgcaagaattgtaagtccatttataattatgttactgaagaa |
45075582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 45078464 - 45078535
Alignment:
| Q |
11 |
cagagacaatgtagttgtcttcgatcctaacgttcgtagatgaatctgttaagaaggcgaaaaatgggaaaa |
82 |
Q |
| |
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||||||||||| |||||||||| || |||||||| ||| |||| ||||||||||||| |||||||||||||| |
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| T |
45078464 |
cagagacaatgaagttgtcttcaattctaacgtttgtacatgagtctgttaagaaggggaaaaatgggaaaa |
45078535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 45067674 - 45067760
Alignment:
| Q |
11 |
cagagacaatgtagttgtcttcgatcctaacgttcgtagatgaatctgttaagaaggcgaaaaatgggaaaatcaagcagtggttag |
97 |
Q |
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|||||||||||||||||||||| || |||||| ||| | || ||||||||||||| ||||||||||||| |||| ||||||||| |
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| T |
45067674 |
cagagacaatgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggcaaaaatgggaaaaacaagaagtggttag |
45067760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 17587776 - 17587834
Alignment:
| Q |
293 |
ttattacctgggtctattccatctgtgtttggagagtctactggtgcaagaatggtaag |
351 |
Q |
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||||||||||| |||||||||||||||| |||||||| | ||||||| ||||||||| |
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| T |
17587776 |
ttattacctggaactattccatctgtgttgggagagtcaattggtgcagtaatggtaag |
17587834 |
T |
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