View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2889_low_9 (Length: 431)
Name: NF2889_low_9
Description: NF2889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2889_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Original strand, 13558342 - 13558754
Alignment:
| Q |
9 |
aaatgaaggaggttgagaaaactcaggatgtcaagattaatgttaagattcaagattgtagagaagaagaagaa---------taaggttttgatagtta |
99 |
Q |
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| T |
13558342 |
aaatgaaggaggttaaggaaattcaggatgtcaagattaatgttaagattcaagattgtagagaagaagaagaagaagaagaataaggttttgatagtta |
13558441 |
T |
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| Q |
100 |
gtcgctaacttagcattgagactttaacttttcactgtagtagtagtagttacttgaaaagcttaggattgagattgactgtgtatgttttgaattgctt |
199 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13558442 |
gtcgctgacttagcattgagactttaacttttcactgta-tagtagtagttacttgaaaagcttaggattgagattgactgtgtatgttttgaattgctt |
13558540 |
T |
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| Q |
200 |
gattaccattatccaatactatttcactttatgttcataaagtttgcattgaatatgtttacttaatttgtttttgtttaccannnnnnnctaattttag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13558541 |
gattaccattatccaatactatttcactttatgttcataaagtttgcattgaatatgtttacttaatttgtttttgtttaccatttttttctaattttag |
13558640 |
T |
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| Q |
300 |
tagcatctttgaaaactttgcttcgatatgtggttaaaacctttggagatctagacatcttgaaatgattttgtaaaagaaggttgaaggtagagtattg |
399 |
Q |
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| T |
13558641 |
tagcatctttgaaaactttgcttcgatatgtggttaaaaccgttggagatctagacatcttgaaatgattttgtaaaagaaggttgtaggtagagtattg |
13558740 |
T |
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| Q |
400 |
gatcgggagaagaa |
413 |
Q |
| |
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| T |
13558741 |
gatcgggagaagaa |
13558754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 20243163 - 20243091
Alignment:
| Q |
290 |
ctaattttagtagcatctttgaaaactttgcttc--gatatgtggttaaaacctttggagatctagacatctt |
360 |
Q |
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| T |
20243163 |
ctaattttagtagcttctttgaaaactttgcttccagatatgtggttaaaaccgtaggagatctagacatctt |
20243091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 17665067 - 17665188
Alignment:
| Q |
35 |
gatgtcaagattaatgttaagattcaagattgtagagaagaagaagaataaggttttgatagttagtcgctaacttagcattgagactttaacttttcac |
134 |
Q |
| |
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| T |
17665067 |
gatgtgaagattaatgtcaagattcaagattgtag---agaagaagaataagattttgatagtga----ctaacttaatatagagactttaacttttcac |
17665159 |
T |
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| Q |
135 |
tgtagtagtagtagttacttgaaaagcttaggatt |
169 |
Q |
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| T |
17665160 |
t------gtaatagttacttgaaaagcttaggatt |
17665188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 20243349 - 20243258
Alignment:
| Q |
184 |
atgttttgaattgcttgattaccattatccaatactatttcactttatgttcataaagtttgcattgaatatgtttacttaatttgtttttgt |
276 |
Q |
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| T |
20243349 |
atgttttgaattccttgactatcattatccaatactatttaagtttataatcat-aagtttgcattgaaaatggttactcaatgtgttgttgt |
20243258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 20244054 - 20243964
Alignment:
| Q |
36 |
atgtcaagattaatgttaagattcaagattgtagagaagaagaagaataaggttttgatagttagtcgctaacttagcattgagactttaacttttca |
133 |
Q |
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| T |
20244054 |
atgtgaagattattgtcaagattcaagattttagagaaga---agaataaggttttgatagtga----ctaacttagcataaagattttaacttttca |
20243964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 14680267 - 14680146
Alignment:
| Q |
35 |
gatgtcaagattaatgttaagattcaagattgtagagaagaagaagaataaggttttgatagttagtcgctaacttagcattgagactttaacttttcac |
134 |
Q |
| |
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||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| | |||||||| || |||||||||||||||||| |
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| T |
14680267 |
gatgtgaagattaatgtcaagattcaagactgtagagaaga---agaataaggttttgatagtga----ctaacttaatatagagactttaacttttcac |
14680175 |
T |
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| Q |
135 |
tgtagtagtagtagttacttgaaaagcttaggatt |
169 |
Q |
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| ||| |||||||||||||||||||||||| |
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| T |
14680174 |
t------gtaatagttacttgaaaagcttaggatt |
14680146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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