View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2890_high_1 (Length: 501)
Name: NF2890_high_1
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 78 - 485
Target Start/End: Original strand, 8437481 - 8437894
Alignment:
| Q |
78 |
ttagtgaagtgtgtggagggcagagggcgtatgctgaaacgtgtaacagtttagttttgttctcaaggaaatatattgccagtaaacaaaaaagataagg |
177 |
Q |
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| T |
8437481 |
ttagtgaagtgtgtggagggcagagggcgtatgctgaaacgtgtaacagtttagttttgttctcaaggaaatatattgccagtaaacaaaaaagataagg |
8437580 |
T |
|
| Q |
178 |
atatatctttcgaaaaatgaaatcagtgagacaaatccttaacnnnnnnnnnnnnnnnnnnnngtttatgatcaatacaaacatgaacaagcaattgatt |
277 |
Q |
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| T |
8437581 |
atatatctttcgaaaaatgaaatcagtgagacaaatccttaactatatatctcacaaaaatatgtttatgatcaatacacacatgaacaagcaattgatt |
8437680 |
T |
|
| Q |
278 |
tgattt------aataagtaacacgaactccttggtacctgagaatttcaccaatgagttcacctttccctgaaccaacatacctaccagcaatcttacc |
371 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437681 |
tgatttgattttaataagtaacacgaactccttggtacctgagaatttcaccaatgagttcacctttccctgaaccaacatacctaccagcaatcttacc |
8437780 |
T |
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| Q |
372 |
atctctaatgaacaaaaaagtaggaacctgaacaacttccatgtccctcaaaaactgcatacaactatcattctcatcaccattcatccttgcaaaaata |
471 |
Q |
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| T |
8437781 |
atctctaatgaacaaaaaagtaggaacctgaacaacttccatgtccctcaaaaactgcatacaactatcattctcatcaccattcatccttgcaaaaata |
8437880 |
T |
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| Q |
472 |
acagtatcattcat |
485 |
Q |
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| T |
8437881 |
acagtatcattcat |
8437894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 8437433 - 8437462
Alignment:
| Q |
18 |
aaatataaacatgtacacactataataagc |
47 |
Q |
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| T |
8437433 |
aaatataaacatgtacacactataataagc |
8437462 |
T |
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