View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2890_high_12 (Length: 291)
Name: NF2890_high_12
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 48 - 283
Target Start/End: Original strand, 47640702 - 47640943
Alignment:
| Q |
48 |
ctcacctttaactcactttgtaaaggaata------acagcagcttgacttaactcacgttagtgtttggaacgtgacttatgtcatgttgaattataca |
141 |
Q |
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| T |
47640702 |
ctcacctttaactcactttgtaaaggaatgcatttgacagcagcgtgagttaactcacgttggtgttcggaacgtgacttatgtcacgttggattataca |
47640801 |
T |
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| Q |
142 |
ctcgcgtgagttaactcatgtgggggtattttgttggaagaagagcatttttcaaagctttgggcaaacagtacatttcggcccaatagcaaaaattgaa |
241 |
Q |
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| T |
47640802 |
ctcgcgtgagttaatttatgcgggggtattttattggaagaagagcaattttcaaagctttgggcaaacagtacatttcggctcaatagcaaaaattaaa |
47640901 |
T |
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| Q |
242 |
aatgggcccaattatcgtagttgattgaatgaccttcatctc |
283 |
Q |
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| T |
47640902 |
tatgggcccaattatcgtagttgactgaatgaccttcttctc |
47640943 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 32830777 - 32830805
Alignment:
| Q |
33 |
accaaaaagttgcttctcacctttaactc |
61 |
Q |
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| T |
32830777 |
accaaaaagttgcttctcacctttaactc |
32830805 |
T |
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