View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2890_high_16 (Length: 248)

Name: NF2890_high_16
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2890_high_16
NF2890_high_16
[»] chr2 (2 HSPs)
chr2 (12-248)||(41028453-41028687)
chr2 (12-238)||(41035306-41035530)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 41028687 - 41028453
Alignment:
Q  12 acagacgggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttagagtccataatgaca 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||    
T  41028687 acagaagggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttgaagt--ataatgaca 41028590  T
Q  112 aggttaatggccgcaaaacacaggttttgaatcttttgattctgtgctatttgaagtcaccgcgacatggaaaaagcttcaaaaagaggaggatcagcac 211  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||    
T  41028589 aggttaatggccgcaaaacacaggttttgaatcttttgattccgtgctatttgaagtaaccgcgacatggcaaaagcttcaaaaagagtaggatcagcac 41028490  T
Q  212 aaatttcctctgtttcacaagccaagagagccacact 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  41028489 aaatttcctctgtttcacaagccaagagagccacact 41028453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 41035530 - 41035306
Alignment:
Q  12 acagacgggtaaatcctaactataagcctcattgttcaacttacttttcaattgattatctaccagcagctgcatgatgtctttagagtccataatgaca 111  Q
    ||||| ||||| | ||||||||  |||| |||| |||||||||  | |||||||| ||||| ||||| ||||||||||||||||  |||||| ||| |||    
T  41035530 acagaagggtagaccctaactacgagccccattattcaacttatgtgtcaattgaatatctcccagctgctgcatgatgtctttgcagtccaaaataaca 41035431  T
Q  112 aggttaatggccgcaaaacacaggttttgaatcttttgattctgtgctatttgaagtcaccgcgacatggaaaaagcttcaaaaagaggaggatcagcac 211  Q
    ||||||||||| |||||||||||||||||||||  |||||||  |||||||||||||||||||| ||||| |||||||||| |||||| ||||||| |||    
T  41035430 aggttaatggctgcaaaacacaggttttgaatc--ttgattccttgctatttgaagtcaccgcgccatggcaaaagcttcagaaagagtaggatcaacac 41035333  T
Q  212 aaatttcctctgtttcacaagccaaga 238  Q
    |||||||||||||||||||||| ||||    
T  41035332 aaatttcctctgtttcacaagctaaga 41035306  T

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