View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2890_high_2 (Length: 458)
Name: NF2890_high_2
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 445
Target Start/End: Original strand, 7543165 - 7543607
Alignment:
| Q |
12 |
tgaaatgaattgttaattttgttgatcagatttgtagagaaatagacatttgtatannnnnnnnnnnnnnnacacacttatatagttttcataacctcca |
111 |
Q |
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| T |
7543165 |
tgaaatgaattgttaattttgttgatcagatttgtagagaaatagacatttgtatattttttagtttttttactcacttatatagttttcataacctcca |
7543264 |
T |
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| Q |
112 |
gtttttgtctattcattgatgtatattgatctaataatttatagtaaatgctctttgccaccactagtcnnnnnnnnt---------tattttgattatg |
202 |
Q |
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| T |
7543265 |
gtttttgtctattcattgatgtatattgatctaataatttatagtaaatgctctttgccaccaatagtcaaaaaaattattttgatttattttgattatg |
7543364 |
T |
|
| Q |
203 |
actaaaatgatggttgattgtatggtaggaagcatcaacggccaagtatatagtgcaacaatatatagcagcaacaggaggacaaccagcattgaatgtg |
302 |
Q |
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| T |
7543365 |
actaaaatgatggttgattgtatggtaggaagcatcaacggccaagtatatagtgcaacaatatatagcagcaacaggaggacaaccagcattgaatgtg |
7543464 |
T |
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| Q |
303 |
gttgaaagtatgtgtgtaatggggcaagtcaggattactgcttcagattttcatcatactggtgaaaccattgaagtgnnnnnnncctctgaagagagtg |
402 |
Q |
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| T |
7543465 |
gttgaaagtatgtgtgtaatggggcaagtcaggattactgcttcagattttcatcatactggtgaaaccattgaagtgaaaaaaacctctgaagagagtg |
7543564 |
T |
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| Q |
403 |
gaggatttgttttatggcaaaaggatccagatttgtggtgttt |
445 |
Q |
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| T |
7543565 |
gaggatttgttttatggcaaaaggatccagatttgtggtgttt |
7543607 |
T |
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