View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2890_high_23 (Length: 202)
Name: NF2890_high_23
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 137; Significance: 9e-72; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 4246524 - 4246373
Alignment:
| Q |
12 |
cagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgcc |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4246524 |
cagagacacaaacccatgcttgaacatcaaatttctgctgtatactgc-atgattgtatacagattgggctaaagtgatttttcccacaccacccatgcc |
4246426 |
T |
|
| Q |
112 |
aactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtcta |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4246425 |
aactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtcta |
4246373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 4314855 - 4315014
Alignment:
| Q |
24 |
cccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatggggat |
123 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| || |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4314855 |
cccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatggggat |
4314954 |
T |
|
| Q |
124 |
cacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggc |
183 |
Q |
| |
|
|||| ||| || |||||||||||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
4314955 |
cacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggc |
4315014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 4305988 - 4306146
Alignment:
| Q |
19 |
acaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatg |
118 |
Q |
| |
|
|||| |||||||||| |||||||| || |||| |||| || ||| ||||| ||| |||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
4305988 |
acaagcccatgcttgcacatcaaaattttgctttatattgtcattgttgtacacaaattgggctaatatgatttttcccaccccacccatgccaactatg |
4306087 |
T |
|
| Q |
119 |
gggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgag |
177 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
4306088 |
gggatcacagtcacacaagtcttatcatcaacatgatcatcatctaacagtaacttgag |
4306146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 4253635 - 4253528
Alignment:
| Q |
19 |
acaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatg |
118 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||||||| |||| ||||| ||||||||||||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
4253635 |
acaagcccatgcttgaacatcaaacttctgctttatactgtcatggttgtacacagattgggctaaaattgtttttcccacaccacccataccaactatg |
4253536 |
T |
|
| Q |
119 |
gggatcac |
126 |
Q |
| |
|
|||||||| |
|
|
| T |
4253535 |
gggatcac |
4253528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 41933079 - 41932915
Alignment:
| Q |
19 |
acaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatg |
118 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| |||| || |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41933079 |
acaagcccatgcttgaacatcaaacttttgctttatattgtcatggttgtacacagattgggctaaagtggtttttcccaccccacccatgccaactatg |
41932980 |
T |
|
| Q |
119 |
gggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggc |
183 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
41932979 |
gggatcacactcacacaagtcttatcatcaacatgatcatcatctaagagtaacttgagtatggc |
41932915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 34802891 - 34803046
Alignment:
| Q |
19 |
acaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatg |
118 |
Q |
| |
|
||||||||||||||||||| | ||||||| || ||||||| |||| |||| |||||||||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
34802891 |
acaaacccatgcttgaacaccgaatttcttctttatactgtcatggatgtacacagattgggctaaagtggtttttcctattccacccatgctaactatg |
34802990 |
T |
|
| Q |
119 |
gggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtat |
180 |
Q |
| |
|
|||||| | |||||||||||||| | ||| | |||| ||||||| ||| |||||||| |
|
|
| T |
34802991 |
gggatctc------acaagtcttatcattatcatcaccatcatctaacagtaatttgagtat |
34803046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University