View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2890_high_5 (Length: 402)
Name: NF2890_high_5
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 386
Target Start/End: Complemental strand, 7941143 - 7940763
Alignment:
| Q |
6 |
ataatcaacggatttgctctgccactgaaagaagagcacaagctgtttctcgtgcgagctcttattcctcttcataaaccgaaatgcataccaatgtatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7941143 |
ataatcaacggatttgctctgccactgaaagaagagcacaagctgtttctcgtgcgagctcttattcctcttcataaaccgaaatgcataccaatgtatc |
7941044 |
T |
|
| Q |
106 |
accagcagttatcttactgcatcacacaatttgtggaaaaagactgcaaacttgctgatacgatcatacgtggattattgaaatactggccgataacaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7941043 |
accagcagttatcttactgcatcacacaatttgtggaaaaagactgcaaacttgctgatacgatcatacgtggattattgaaatactggccgataacaaa |
7940944 |
T |
|
| Q |
206 |
tagttcgaaggaggttatgtttttaggggagctggaagaagtcttggaagcaactcagcctgcagagtttcagaaatgcatggtgctcttgtttcgccaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7940943 |
tagttcgaaggaggttatgtttttaggggagctggaagaagtcttggaagcaactcagcctgcagagtttcagaaatgcatggtgctcttgtttcaccaa |
7940844 |
T |
|
| Q |
306 |
ataagacgttgcttgagcagttcacattttcaggtttgttaaatctagtagttttcatcaactttcacattctatattttt |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7940843 |
ataagacgttgcttgagcagttcacattttcaggtttgttaaatctagtagttttcatcaactttcacattctatattttt |
7940763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 97 - 303
Target Start/End: Original strand, 38913117 - 38913323
Alignment:
| Q |
97 |
caatgtatcaccagcagttatcttactgcatcacacaatttgtggaaaaagactgcaaacttgctgatacgatcatacgtggattattgaaatactggcc |
196 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| || || |||||||| ||||||||||| ||||||||||| || ||| | || |||||||| |||||||| |
|
|
| T |
38913117 |
caatgtatcatcagcagttatcttattgcattactcagtttgtggagaaagactgcaagcttgctgatacaataataagggggttattgaagtactggcc |
38913216 |
T |
|
| Q |
197 |
gataacaaatagttcgaaggaggttatgtttttaggggagctggaagaagtcttggaagcaactcagcctgcagagtttcagaaatgcatggtgctcttg |
296 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||| ||| ||||||||||||||||||||||||| ||| |||| || ||| ||| |||||||| ||| |
|
|
| T |
38913217 |
gataacaaatagttcaaaggaagttatgttcctaggtgagttggaagaagtcttggaagcaactcaacctccagaattccagcgatgtatggtgctattg |
38913316 |
T |
|
| Q |
297 |
tttcgcc |
303 |
Q |
| |
|
||||||| |
|
|
| T |
38913317 |
tttcgcc |
38913323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University