View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2890_low_11 (Length: 308)
Name: NF2890_low_11
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 18004724 - 18004546
Alignment:
| Q |
1 |
gatattggtgattatagggaagctctcggatgagatgttgaattttagtgagaattttggaggcatatatagaggggggagaagaatgtagaattactaa |
100 |
Q |
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| T |
18004724 |
gatattggtgattatagggaagctttcggatgagatgttgaattttggtgagaattttggaggcatatatagaggggggagaagaatgtagaattactaa |
18004625 |
T |
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| Q |
101 |
agatatttattcggtagaattaataatgttggattattacgcagacccatttgtcatccatcgcaattttatccagattgagaga |
185 |
Q |
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| T |
18004624 |
agatat---ttcggtagaat---tactgttggattattaggcagacccttttgtcatccattgcaattttatccggatcgagaga |
18004546 |
T |
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Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 20644263 - 20644085
Alignment:
| Q |
1 |
gatattggtgattatagggaagctctcggatgagatgttgaattttagtgagaattttggaggcatatatagaggggggagaagaatgtagaattactaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20644263 |
gatattggtgattatagggaagctttcggatgagatgttgaattttggtgagaattttggaggcatatatagaggggggagaagaatgtagaattactaa |
20644164 |
T |
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| Q |
101 |
agatatttattcggtagaattaataatgttggattattacgcagacccatttgtcatccatcgcaattttatccagattgagaga |
185 |
Q |
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|||||| ||||||||||| || ||||||||||||| |||||||| |||||||||||| |||||||||||| ||| |||||| |
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| T |
20644163 |
agatat---ttcggtagaat---tactgttggattattaggcagacccttttgtcatccattgcaattttatccggatcgagaga |
20644085 |
T |
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