View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2890_low_13 (Length: 286)
Name: NF2890_low_13
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_low_13 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 18005008 - 18004737
Alignment:
| Q |
15 |
gacagggagtgtagggattggtagtggaggagctggtaatggaaagagtggtaattgattcttttctacttgtgtcttttcaatgttataattcttgctt |
114 |
Q |
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| T |
18005008 |
gacagggagtgtagggattggtagtggaggagctggtaatggaaagggtggtaactgattcttatctacttgtgtcttttcaatgttataattcttgctt |
18004909 |
T |
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| Q |
115 |
ggattaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgagttgtctagcaccacttatggtaacaaggttgt |
214 |
Q |
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| T |
18004908 |
ggattaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgaattgtctagaaccacttatggtaacaaagttgg |
18004809 |
T |
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| Q |
215 |
tcatcaccaaaagcaaacaaaacaagaacattaatggattcaaagtcattgtgtaagatttttggaaagcca |
286 |
Q |
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| T |
18004808 |
tcatcaccaaaagcaaacaaaacaagaacattaatggattcaaagtcattgtgtaagatttttggaaagcca |
18004737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 20644547 - 20644276
Alignment:
| Q |
15 |
gacagggagtgtagggattggtagtggaggagctggtaatggaaagagtggtaattgattcttttctacttgtgtcttttcaatgttataattcttgctt |
114 |
Q |
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| T |
20644547 |
gacagggagtgtagggattggtagtggaggagctggtaatggaaagggtggtaactgattcttatctacttgtgtcttttcaatgttataattcttgctt |
20644448 |
T |
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| Q |
115 |
ggattaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgagttgtctagcaccacttatggtaacaaggttgt |
214 |
Q |
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| T |
20644447 |
ggattaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgaattgtctagaaccacttatggtaacaaagttgg |
20644348 |
T |
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| Q |
215 |
tcatcaccaaaagcaaacaaaacaagaacattaatggattcaaagtcattgtgtaagatttttggaaagcca |
286 |
Q |
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| T |
20644347 |
tcatcaccaaaagcaaacaaaacaagaacattaatggattcaaagtcattgtgtaagatttttggaaagcca |
20644276 |
T |
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