View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2890_low_14 (Length: 269)

Name: NF2890_low_14
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2890_low_14
NF2890_low_14
[»] chr2 (1 HSPs)
chr2 (12-269)||(8474481-8474735)
[»] chr1 (3 HSPs)
chr1 (12-110)||(41556206-41556304)
chr1 (21-110)||(44179778-44179867)
chr1 (21-110)||(44206909-44206998)
[»] chr5 (6 HSPs)
chr5 (12-110)||(11496943-11497041)
chr5 (12-110)||(11541272-11541370)
chr5 (12-110)||(11504270-11504368)
chr5 (12-110)||(11511664-11511762)
chr5 (12-110)||(11519040-11519138)
chr5 (12-110)||(11526445-11526543)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 8474481 - 8474735
Alignment:
Q  12 atgaacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttgg 111  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8474481 atgaacaagagggctggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccaaattggtttttgg 8474580  T
Q  112 gttaaannnnnnnnnnnnnnnngaatgtaaaagttgataatatgagattgaaaatttgcattaggtgctattattttatagaatgcatcaattactgacc 211  Q
    ||| ||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8474581 gttgaatttttttttttttt---aatgtaaaagttgataatatgagattgaaaatttgcattaggtgctattattttatagaatgcatcaattactgacc 8474677  T
Q  212 taagaattctcatttggtttagattttccaatgttcttcaagtacattcctaatctaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8474678 taagaattctcatttggtttagattttccaatgttcttcaagtacatgcctaatctaa 8474735  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 41556206 - 41556304
Alignment:
Q  12 atgaacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 110  Q
    |||||||||||||| |||||||| | ||| || |||||||||||| || ||| | | ||||| ||  ||  ||||||||||||||||||||||||||||    
T  41556206 atgaacaagagggctggtgaattaagtgctgcagagttggataatattatgatagtggttgcgaatcctcgtcaattcaaggttccagattggtttttg 41556304  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 44179778 - 44179867
Alignment:
Q  21 agggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 110  Q
    ||||| |||||||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||| |||||||||||||||||||||    
T  44179778 agggctggtgaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaatttaaggttccagattggtttttg 44179867  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 44206909 - 44206998
Alignment:
Q  21 agggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 110  Q
    ||||| |||||||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||| |||||||||||||||||||||    
T  44206909 agggctggtgaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaatttaaggttccagattggtttttg 44206998  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 11496943 - 11497041
Alignment:
Q  12 atgaacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 110  Q
    ||||||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  ||||||||||||||||||||||||||||    
T  11496943 atgaacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccagattggtttttg 11497041  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 11541272 - 11541370
Alignment:
Q  12 atgaacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 110  Q
    ||||||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  ||||||||||||||||||||||||||||    
T  11541272 atgaacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccagattggtttttg 11541370  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 11504270 - 11504368
Alignment:
Q  12 atgaacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 110  Q
    ||||||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||||||||||||| |||||||||||    
T  11504270 atgaacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttg 11504368  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 11511664 - 11511762
Alignment:
Q  12 atgaacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 110  Q
    ||||||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||||||||||||| |||||||||||    
T  11511664 atgaacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttg 11511762  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 11519040 - 11519138
Alignment:
Q  12 atgaacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 110  Q
    ||||||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||||||||||||| |||||||||||    
T  11519040 atgaacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttg 11519138  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 11526445 - 11526543
Alignment:
Q  12 atgaacaagagggccggtgaattgaatgccgcggagttggataattttctgaaaatagttgcaaactctaatcaattcaaggttccagattggtttttg 110  Q
    ||||||| |||||| ||| |||||| ||| || |||||||||||| || ||| | | ||||| ||  ||  |||||||||||||||| |||||||||||    
T  11526445 atgaacatgagggctggtaaattgagtgctgcagagttggataatattatgacagtggttgcgaatcctcgtcaattcaaggttccatattggtttttg 11526543  T

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