View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2890_low_19 (Length: 239)

Name: NF2890_low_19

Description: NF2890

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2890_low_19

[»] chr3 (1 HSPs)

Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 163; E-Value: 3e-87

Query Start/End: Original strand, 20 - 239

Target Start/End: Original strand, 36588044 - 36588264

Alignment:

Q	20	taccagcagataatacaataatccttgaaagaaacataaaaga--gtaaaagttctataataatccacctgagcaggcgcacctggaggaagcatagaaa	117	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36588044	taccagtagataattcaataatccttgaaagaaacataaaagaaagtaaaaattctataata-tccacctgagcaggcgcacctggaggaagcatagaaa	36588142	T

Q	118	gaagaacttcacgaacaacttgttgttgctgcaaacgagaccgacgcaacattactcttttcgacacatccacaaaactctcataatcatactcccaaat	217	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36588143	gaagaacctcacgaacaacttgctgttgctgcaaacgagaccgacgcaacattactcttttggacacatcaacaaaactctcataatcatactcccaaac	36588242	T

Q	218	atccaaccaacctttcttttcc	239	Q
		\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|
T	36588243	atccaacaaacccttcttttcc	36588264	T

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