View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2890_low_21 (Length: 227)

Name: NF2890_low_21
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2890_low_21
NF2890_low_21
[»] chr7 (4 HSPs)
chr7 (87-212)||(37503331-37503456)
chr7 (87-161)||(33829827-33829902)
chr7 (9-50)||(37503489-37503529)
chr7 (120-160)||(24857356-24857396)
[»] chr6 (4 HSPs)
chr6 (87-160)||(12470314-12470388)
chr6 (87-160)||(34112734-34112808)
chr6 (9-49)||(12470425-12470465)
chr6 (9-49)||(34112844-34112884)
[»] chr3 (2 HSPs)
chr3 (87-160)||(34306544-34306618)
chr3 (120-163)||(8366222-8366265)
[»] chr4 (1 HSPs)
chr4 (120-160)||(25267846-25267886)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 37503456 - 37503331
Alignment:
Q  87 tggattattgatgcatttttctaaagttgaggtatgcatgtgcatcccctgacttgtaggtggctccgccactggttgaactccattcttctactccttc 186  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37503456 tggattattggtgcatttttctaaagttgaggtatgcatgtgcatcccctgacttgtaggtggctccgccactggttgaactccattcttctactccttc 37503357  T
Q  187 atcccaattatttcatcccaaatatg 212  Q
    ||||||||||||||||||||||||||    
T  37503356 atcccaattatttcatcccaaatatg 37503331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 33829902 - 33829827
Alignment:
Q  87 tggattattgatgcatttttctaaagttgag-gtatgcatgtgcatcccctgacttgtaggtggctccgccactgg 161  Q
    |||||||||| || ||||||| ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  33829902 tggattattggtgtatttttcaaaagttgagaggatgcatgtgcatcccctgacttgtacgtggctccgccactgg 33829827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 37503529 - 37503489
Alignment:
Q  9 gagtgagatgaaagtgcaaaaaaaagttgagggtatgcaatc 50  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  37503529 gagtgagttgaaagtgcaaaaaaa-gttgagggtatgcaatc 37503489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 24857356 - 24857396
Alignment:
Q  120 atgcatgtgcatcccctgacttgtaggtggctccgccactg 160  Q
    |||||| |||||||||| ||||||| |||||||||||||||    
T  24857356 atgcatctgcatcccctcacttgtatgtggctccgccactg 24857396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 12470388 - 12470314
Alignment:
Q  87 tggattattgatgcatttttctaaagttgag-gtatgcatgtgcatcccctgacttgtaggtggctccgccactg 160  Q
    |||||||||| || ||||||| ||||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  12470388 tggattattggtgtatttttcaaaagttgagaggatgcatgtgcatcccctgacttgtacgtggctccgccactg 12470314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 34112808 - 34112734
Alignment:
Q  87 tggattattgatgcatttttctaaagttgag-gtatgcatgtgcatcccctgacttgtaggtggctccgccactg 160  Q
    |||||||||| || ||||||  ||||||||| | ||||||||||||||||| ||||||| |||||||||||||||    
T  34112808 tggattattggtgtattttttaaaagttgagaggatgcatgtgcatcccctaacttgtatgtggctccgccactg 34112734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 12470465 - 12470425
Alignment:
Q  9 gagtgagatgaaagtgcaaaaaaaagttgagggtatgcaat 49  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  12470465 gagtgagttgaaagtgcaaataaaggttgagggtatgcaat 12470425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 34112884 - 34112844
Alignment:
Q  9 gagtgagatgaaagtgcaaaaaaaagttgagggtatgcaat 49  Q
    ||||||| |||||||||| | ||||||||||||||||||||    
T  34112884 gagtgagttgaaagtgcagataaaagttgagggtatgcaat 34112844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 34306544 - 34306618
Alignment:
Q  87 tggattattgatgcatttttctaaagttgag-gtatgcatgtgcatcccctgacttgtaggtggctccgccactg 160  Q
    |||||||||| || ||||||| ||||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  34306544 tggattattggtgtatttttcaaaagttgagaggatgcatgtgcatcccctgacttgtacgtggctccgccactg 34306618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 8366265 - 8366222
Alignment:
Q  120 atgcatgtgcatcccctgacttgtaggtggctccgccactggtt 163  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||    
T  8366265 atgcatctgcatcccctcacttgtatgtggctccgccactggtt 8366222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 25267886 - 25267846
Alignment:
Q  120 atgcatgtgcatcccctgacttgtaggtggctccgccactg 160  Q
    |||||| |||||||||| ||||||| |||||||||||||||    
T  25267886 atgcatttgcatcccctcacttgtatgtggctccgccactg 25267846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University