View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2890_low_22 (Length: 225)
Name: NF2890_low_22
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 52409332 - 52409141
Alignment:
| Q |
15 |
cacagagtaacatcataagaacagcaccactgccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccatt |
114 |
Q |
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| T |
52409332 |
cacagagtaacatcataagaacagcaccactgccagccaagtcagtggttgaagacgaacttgccccagcaccagctgcaaccgtatcattattaccatt |
52409233 |
T |
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| Q |
115 |
gccaacttcatcacactcgcatcataatcaaactgatcttatactcagcaatcgcaatagcactgattatgatgcttccaaagtacaagtac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409232 |
gccaacttcatcacactcgcatcataatcaaactgatcttatactcagcaatcgcaatagcactgattatgatgcttccaaagtacaagtac |
52409141 |
T |
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