View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2890_low_3 (Length: 447)
Name: NF2890_low_3
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 6958784 - 6958976
Alignment:
| Q |
1 |
atattctttgaattcaatatatt---aaccctatctttattaataggaaagcacaaagaggttccagaagaacattacacataatagaacctcggtcgat |
97 |
Q |
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| T |
6958784 |
atattctttgaattcaatatatttagaaccctatctttattaatagtaaagcacaaagaggtttcagaaggacattacacataatagaacctcggtcgat |
6958883 |
T |
|
| Q |
98 |
gcttctacatgactattggaattgaaagttatataaaacaaaacttcatttcgtatctttactttacgacatttactgaattgaggactgact |
190 |
Q |
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| T |
6958884 |
gcttctacatgactattggaattgaaagttatataaaacaaaacttcatttcatatctttactttacgacatttactaaattgaggactgact |
6958976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 254 - 433
Target Start/End: Original strand, 6960884 - 6961072
Alignment:
| Q |
254 |
tagtttttgtttaatcttaatgccaccaaccaatggtaatctttccacat---------agcttgaaaagtcttctagcttatttggcttcaaacactcc |
344 |
Q |
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| T |
6960884 |
tagtttttgtttagtcttaatgccaccaaccaatggtaatctttccacatggtaactctagcttgaaaagtcttctagcttatttggcttcaaacactac |
6960983 |
T |
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| Q |
345 |
atacacacttgttttcaaaaaacatttaaatttatgatcaaagagtttaaacaaagcgttgtattacaagtgtctatgatataaatgtt |
433 |
Q |
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| T |
6960984 |
atacacacttgttttcaaaaaacatttaaatttatgatcaaagagtttaaagaaagcgttgtattacaagtgtctatgatataaatgtt |
6961072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 23007044 - 23006852
Alignment:
| Q |
1 |
atattctttgaattcaatatattaa---ccctatctttattaataggaaagcacaaagaggttccagaagaacattacacataatagaacctcggtcgat |
97 |
Q |
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||||||||||||||||||||||| | ||||||||||||||| |||||| |||| ||||||||| |||| |||||||||| || |||||| | ||||| |
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| T |
23007044 |
atattctttgaattcaatatattcaggaccctatctttattaacaggaaaacacagagaggttcctgaaggacattacacacaacagaaccacactcgat |
23006945 |
T |
|
| Q |
98 |
gcttctacatgactattggaattgaaagttatataaaacaaaacttcatttcgtatctttactttacgacatttactgaattgaggactgact |
190 |
Q |
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| T |
23006944 |
gcttctacacggttattggaattgaaagttatataaaacaaagcttcattttgtgtcattactttacgacgttcactgaattgaagactgact |
23006852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 30575312 - 30575120
Alignment:
| Q |
1 |
atattctttgaattcaatatattaa---ccctatctttattaataggaaagcacaaagaggttccagaagaacattacacataatagaacctcggtcgat |
97 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||||||| |||||| |||| |||| |||| |||| |||||||||| || |||||| | |||||| |
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| T |
30575312 |
atattctttgaattcaatatattcaggaccctatctttattaacaggaaaacacagagagattcctgaaggacattacacacaacagaaccacagtcgat |
30575213 |
T |
|
| Q |
98 |
gcttctacatgactattggaattgaaagttatataaaacaaaacttcatttcgtatctttactttacgacatttactgaattgaggactgact |
190 |
Q |
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||||||||| | ||||||||||||||||||||||||||||| |||||||| || || |||||||||||| || |||||||||| |||||||| |
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| T |
30575212 |
gcttctacacggttattggaattgaaagttatataaaacaaagcttcattttgtgtcattactttacgacgttcactgaattgaagactgact |
30575120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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