View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2890_low_4 (Length: 445)
Name: NF2890_low_4
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 3629397 - 3629820
Alignment:
| Q |
18 |
cataggaactaaacaagtgtaccaataaatactttcnnnnnnnnnnnnnctaccaataaataagaaccttaattaacaacaaaaattcccaaaggtctgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3629397 |
cataggaactaaacaagtgtaccaataaatactttcaaaaataaaaaaactaccaataaataagaaccttaattaacaa-aaaaattcccaaaggtctgc |
3629495 |
T |
|
| Q |
118 |
aataatattatccttatcatttcaaagaccacacatataaattgtggcaattattttttcacttaatttgtcaccttttaatatttctgactaggtacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629496 |
aataatattatccttatcatttcaaagaccacacatataaattgtggcaattattttttcacttaatttgtcaccttttaatatttctgactaggtacat |
3629595 |
T |
|
| Q |
218 |
aattggattgcttataaatactctcattggttcattttcttgtcagtgtaaattgagtggctgattcaactatttaattcgttgatcaa--nnnnnnnnn |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629596 |
aattggattgcttataaatactctcattggttcattttcttgtcagtgtaaattgagtggctgattcaactatttaattcgttgatcaattttttttttt |
3629695 |
T |
|
| Q |
316 |
atttggctaaatattcgtttatcatggctttgaatttgccctccccagctcaagtgaaaccctcatttttctctgatatcatcaacccagttatcacccc |
415 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629696 |
atttggctaaatattcgttgatcatggctttgaatttgccctccccagctcaagtgaaaccctcatttttctctgatatcatcaacccagttatcacccc |
3629795 |
T |
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| Q |
416 |
cacaaaacttccaggttcttctctc |
440 |
Q |
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||||||||||||||||||||||||| |
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| T |
3629796 |
cacaaaacttccaggttcttctctc |
3629820 |
T |
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