View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2890_low_6 (Length: 356)
Name: NF2890_low_6
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 22652493 - 22652823
Alignment:
| Q |
13 |
gagaatgagcaaagaagtaattgtatcctagcctaccacc---tacatatttgtacattacgtgcaaataatttcgtataaacaagtacattttnnnnnn |
109 |
Q |
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| T |
22652493 |
gagaatgagcaaagaagtaattgtatcctagcctaccaccacctacatatttgtacttttcgtgcaaataatttggtatgaacaagtacattttcaaaaa |
22652592 |
T |
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| Q |
110 |
nnnnnnnnnnntatacaatttgcaatttcctttatttttatactgaaatattgcaatttcaaatgtagtaacaaaataatagagtgtatgaaccaagaga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22652593 |
ataaaagaaaatatacaatttgcaatttcctttatttttatactgaaatattgcaatttcaaatgtagtaacaaaataatagagtgtatgaaccaagaga |
22652692 |
T |
|
| Q |
210 |
ctgattgttgattttaagttcctgacagccttcttcaaagttgatttctaccaagaggcccctcattaaaatcgcacgaagggaatggaccacaacttca |
309 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22652693 |
ctgattgttgattttaagttcctgacagccttgtccaaagttgatttctaccaagaggcccctcattaaaatcgcacgaagggaatggaccacaacttca |
22652792 |
T |
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| Q |
310 |
gaaatttgaataagctttaattggaccatac |
340 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
22652793 |
gaaatttgaataagctttaattggaccatac |
22652823 |
T |
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