View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2890_low_7 (Length: 335)

Name: NF2890_low_7
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2890_low_7
NF2890_low_7
[»] chr7 (14 HSPs)
chr7 (11-321)||(9266158-9266476)
chr7 (123-321)||(9281559-9281762)
chr7 (123-321)||(9292530-9292733)
chr7 (167-303)||(9232457-9232594)
chr7 (28-96)||(33202368-33202436)
chr7 (26-98)||(32584735-32584808)
chr7 (13-72)||(9281021-9281079)
chr7 (13-72)||(9291992-9292050)
chr7 (26-99)||(4501391-4501465)
chr7 (25-75)||(7637403-7637453)
chr7 (26-98)||(3676774-3676847)
chr7 (26-77)||(5825426-5825478)
chr7 (26-98)||(28517187-28517260)
chr7 (26-98)||(43857008-43857081)
[»] chr3 (2 HSPs)
chr3 (26-97)||(7900993-7901065)
chr3 (26-100)||(13582641-13582716)
[»] chr6 (6 HSPs)
chr6 (26-98)||(357617-357690)
chr6 (26-98)||(28543509-28543582)
chr6 (26-98)||(4206496-4206569)
chr6 (26-98)||(33220611-33220684)
chr6 (26-74)||(24016494-24016543)
chr6 (26-99)||(959713-959787)
[»] chr8 (4 HSPs)
chr8 (26-77)||(25021714-25021766)
chr8 (13-97)||(500362-500448)
chr8 (26-98)||(35739887-35739959)
chr8 (26-77)||(39434822-39434874)
[»] chr1 (4 HSPs)
chr1 (26-100)||(34644698-34644773)
chr1 (26-77)||(4861889-4861941)
chr1 (13-98)||(25375719-25375806)
chr1 (24-96)||(2764615-2764688)
[»] chr4 (7 HSPs)
chr4 (26-99)||(26521621-26521695)
chr4 (26-98)||(3330084-3330157)
chr4 (26-98)||(25504427-25504500)
chr4 (26-98)||(31847221-31847294)
chr4 (26-98)||(50000825-50000898)
chr4 (26-98)||(53619720-53619793)
chr4 (26-77)||(56462007-56462059)
[»] chr5 (6 HSPs)
chr5 (26-98)||(33691955-33692028)
chr5 (26-67)||(13166810-13166851)
chr5 (26-98)||(35310582-35310655)
chr5 (26-98)||(38446300-38446373)
chr5 (26-77)||(27336848-27336900)
chr5 (23-98)||(43129668-43129744)
[»] chr2 (8 HSPs)
chr2 (26-99)||(28225133-28225207)
chr2 (26-98)||(3825861-3825934)
chr2 (26-98)||(44686553-44686626)
chr2 (26-96)||(17344774-17344845)
chr2 (50-96)||(9685340-9685386)
chr2 (26-99)||(27502494-27502568)
chr2 (26-98)||(4412966-4413039)
chr2 (26-74)||(18744854-18744903)
[»] scaffold0031 (1 HSPs)
scaffold0031 (26-77)||(49570-49621)
[»] scaffold0110 (1 HSPs)
scaffold0110 (50-99)||(47464-47513)
[»] scaffold0148 (1 HSPs)
scaffold0148 (50-98)||(33383-33431)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 9266158 - 9266476
Alignment:
Q  11 cagatgggtacaaggaaacatgcatgtgtggatttgaccgggtttcaccacttgtgggattaggggttagtccttttacggtaggaca--------agaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||        ||||    
T  9266158 cagatgggtacaaggaaacatgcatgtgtggatttgaccgggtttcaccacttgtgggattaggggttagggcttttactgtaggacaggaagccaagaa 9266257  T
Q  103 ggtatttgtgagtatacggatgaaggtatttgtgtgtgtttttaaaattatattagggttttgtgtgtgttttagacatgggattatatatttatgtgtg 202  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9266258 ggtatttgtcagtatacggatgaaggtatttgtgtgtgtttttaaaattatattagggttgtgtgtgtgttttagacatgggattatatatttatgtgtg 9266357  T
Q  203 atttcacaataattctttgtggttttggtttgaacaaaatagacgcaacatgaaagagatgataattgtgcactcatagaagagaattataaaataagat 302  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9266358 atttcacaatgattctttctggttttggtttgaacaaaatagacgcaacatgaaagagatgataattgtgcactcatagaagagaattataaaataagat 9266457  T
Q  303 ctgcgaataaagctatgag 321  Q
    |||||||||||||||||||    
T  9266458 ctgcgaataaagctatgag 9266476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 123 - 321
Target Start/End: Original strand, 9281559 - 9281762
Alignment:
Q  123 tgaaggtatttgtgtgtgtttttaaaattatattagggttttgtgtgtgttttagacatg----ggattat-atatttatgtgtgatttcacaataattc 217  Q
    ||||||||||| || |||||||| |||||||||||||| ||||||||||||||| |||||    ||||||| |||||||||||| |||| ||||| ||||    
T  9281559 tgaaggtatttatgagtgttttttaaattatattagggctttgtgtgtgttttatacatgcatgggattatcatatttatgtgttattttacaatgattc 9281658  T
Q  218 tttgtggttttggtttgaacaaaatagacgcaacatgaaagagatgataattgtgcactcatagaagagaattataaaataagatctgcgaataaagcta 317  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||  |||||||||||    
T  9281659 tttgtggttttggtttgaacaaaacagacacaaaatgaaagagatgataattgtacactcatacaagagaatgataaaataagatctcagaataaagcta 9281758  T
Q  318 tgag 321  Q
    ||||    
T  9281759 tgag 9281762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 123 - 321
Target Start/End: Original strand, 9292530 - 9292733
Alignment:
Q  123 tgaaggtatttgtgtgtgtttttaaaattatattagggttttgtgtgtgttttagacatg----ggattat-atatttatgtgtgatttcacaataattc 217  Q
    ||||||||||| || |||||||| |||||||||||||| ||||||||||||||| |||||    ||||||| |||||||||||| |||| ||||| ||||    
T  9292530 tgaaggtatttatgagtgttttttaaattatattagggctttgtgtgtgttttatacatgcatgggattatcatatttatgtgttattttacaatgattc 9292629  T
Q  218 tttgtggttttggtttgaacaaaatagacgcaacatgaaagagatgataattgtgcactcatagaagagaattataaaataagatctgcgaataaagcta 317  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||  |||||||||||    
T  9292630 tttgtggttttggtttgaacaaaacagacacaaaatgaaagagatgataattgtacactcatacaagagaatgataaaataagatctcagaataaagcta 9292729  T
Q  318 tgag 321  Q
    ||||    
T  9292730 tgag 9292733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 167 - 303
Target Start/End: Complemental strand, 9232594 - 9232457
Alignment:
Q  167 gtgtgttttagacatgggattat-atatttatgtgtgatttcacaataattctttgtggttttggtttgaacaaaatagacgcaacatgaaagagatgat 265  Q
    |||||||||| ||||| |||| | ||| |||||||| |||| ||||  ||||||||||||||||||||||| |||  |||| | | | |||||| |||||    
T  9232594 gtgtgttttatacatgagattgttatacttatgtgttattttacaacgattctttgtggttttggtttgaataaagcagacacgagaagaaagatatgat 9232495  T
Q  266 aattgtgcactcatagaagagaattataaaataagatc 303  Q
    ||   |  |||||||||||||||| |||||||||||||    
T  9232494 aaccctaaactcatagaagagaatgataaaataagatc 9232457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 33202368 - 33202436
Alignment:
Q  28 acatgcatgtgtggatttgaccgggtttcaccacttgtgggattaggggttagtccttttacggtagga 96  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||||||||| |  ||||||| ||||||    
T  33202368 acatgcatgtgtggacttgactgggtttcaccgcttgtgggattaggggttggggcttttacagtagga 33202436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 32584808 - 32584735
Alignment:
Q  26 aaacatgcatgtgtggatttgac-cgggtttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||  |   |||||||||||||||    
T  32584808 aaacatgcatgtgtggacttgactcgggtttcacctcttgtgggattaggggtcggggattttacggtaggaca 32584735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 9281021 - 9281079
Alignment:
Q  13 gatgggtacaaggaaacatgcatgtgtggatttgaccgggtttcaccacttgtgggatta 72  Q
    |||||||||||| |||||||||||||| ||||||||||||||||  |||| |||||||||    
T  9281021 gatgggtacaagaaaacatgcatgtgt-gatttgaccgggtttcttcactcgtgggatta 9281079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 9291992 - 9292050
Alignment:
Q  13 gatgggtacaaggaaacatgcatgtgtggatttgaccgggtttcaccacttgtgggatta 72  Q
    |||||||||||| |||||||||||||| ||||||||||||||||  |||| |||||||||    
T  9291992 gatgggtacaagaaaacatgcatgtgt-gatttgaccgggtttcttcactcgtgggatta 9292050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 4501465 - 4501391
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggacaa 99  Q
    |||||||||||||| || ||||| ||| |||||||||||||||||||||| ||  | |||||||| |||||||||    
T  4501465 aaacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggtgtcgggccttttaccgtaggacaa 4501391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 7637403 - 7637453
Alignment:
Q  25 gaaacatgcatgtgtggatttgaccgggtttcaccacttgtgggattaggg 75  Q
    ||||||||||||||||||||||||| |||||| || |||||| ||||||||    
T  7637403 gaaacatgcatgtgtggatttgacccggtttccccccttgtgagattaggg 7637453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 3676847 - 3676774
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    |||||||| ||||| || ||||| ||| |||||||||||||||||||||| ||  |||||||||| ||||||||    
T  3676847 aaacatgcttgtgtagacttgactggggtttcaccacttgtgggattaggtgtcggtccttttaccgtaggaca 3676774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 5825478 - 5825426
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggt 77  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||    
T  5825478 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggt 5825426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 28517187 - 28517260
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||| ||||||||| ||||| ||| |||||||||||||||| ||||||||  |  ||||||| ||||||||    
T  28517187 aaacatgtatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacagtaggaca 28517260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 43857081 - 43857008
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    |||||| |||| ||||| ||||| ||| |||||||||||||||||||||||||  |  ||||||| ||||||||    
T  43857081 aaacatacatgcgtggacttgacgggggtttcaccacttgtgggattaggggtcggggcttttacagtaggaca 43857008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 7901065 - 7900993
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggac 97  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |  |||||||||||||||    
T  7901065 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggattaggggttgggtcttttacggtaggac 7900993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 13582716 - 13582641
Alignment:
Q  26 aaacatgcatgtgtggatttgaccg-ggtttcaccacttgtgggattaggggttagtccttttacggtaggacaag 100  Q
    |||||||||||||| || ||||||| ||||||| |||||||||||||||| || || |||||||| ||||||||||    
T  13582716 aaacatgcatgtgtagacttgaccgaggtttcaacacttgtgggattaggtgtcaggccttttaccgtaggacaag 13582641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 357617 - 357690
Alignment:
Q  26 aaacatgcatgtgtggatttgaccgg-gtttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||  || ||||||||||||||||    
T  357617 aaacatgcatgtgtggacttgactggagtttcaccacttgtgggtttaggggtcggtgcttttacggtaggaca 357690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 28543582 - 28543509
Alignment:
Q  26 aaacatgcatgtgtggatttgaccg-ggtttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  28543582 aaacatgcatgtgtggatttgactgaggtttcaccacttgtgggattagaggtcaggacttttacggtaagaca 28543509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 4206496 - 4206569
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    |||||||||||||| || ||||| ||| ||||||||||||||||||||||  | || |||||||||||||||||    
T  4206496 aaacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggcatcagaccttttacggtaggaca 4206569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 33220611 - 33220684
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||| ||||||||  |  ||||||||||||||||    
T  33220611 aaacatgcatgtgtgaatttgactggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggaca 33220684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 24016543 - 24016494
Alignment:
Q  26 aaacatgcatgtgtggatttgaccgg-gtttcaccacttgtgggattagg 74  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  24016543 aaacatgcatgtgtgaatttgaccggagtttccccacttgtgggattagg 24016494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 959787 - 959713
Alignment:
Q  26 aaacatgcatgtgtggatttgaccgg-gtttcaccacttgtgggattaggggttagtccttttacggtaggacaa 99  Q
    ||||||||||||||||| ||||  |  |||||||||||| |||||||||| ||  | ||||||||||||||||||    
T  959787 aaacatgcatgtgtggacttgattgaagtttcaccacttatgggattaggtgtcgggccttttacggtaggacaa 959713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 25021714 - 25021766
Alignment:
Q  26 aaacatgcatgtgtggatttgaccgg-gtttcaccacttgtgggattaggggt 77  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  25021714 aaacatgcatgtgtggacttgaccggagtttcaccacttgtgggattaggggt 25021766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 500448 - 500362
Alignment:
Q  13 gatgggtacaaggaaa-catgcatgtgtggatttgaccg-ggtttcaccacttgtgggattaggggttagtccttttacggtaggac 97  Q
    |||||||| ||||||| ||||||||||| || ||||  | |||||||||||||||||||||||| ||  | ||||||||||||||||    
T  500448 gatgggtagaaggaaaacatgcatgtgtagacttgagtgaggtttcaccacttgtgggattaggtgtcgggccttttacggtaggac 500362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 35739887 - 35739959
Alignment:
Q  26 aaacatgcatgtgtggatttgac-cgggtttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||| |||||  ||||||||||||| |||||||||  |||  | |||||||||||||||||    
T  35739887 aaacatgcatgtgtggacttgactggggtttcaccactagtgggatta-aggtcgggccttttacggtaggaca 35739959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 39434874 - 39434822
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggt 77  Q
    ||||||||||||||| | ||||| ||| |||||||||||||||| ||||||||    
T  39434874 aaacatgcatgtgtgtacttgactggggtttcaccacttgtgggtttaggggt 39434822  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 34644773 - 34644698
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggacaag 100  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||  |  ||||||||||||||||||    
T  34644773 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacaag 34644698  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 4861889 - 4861941
Alignment:
Q  26 aaacatgcatgtgtggatttgaccgg-gtttcaccacttgtgggattaggggt 77  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||||||||    
T  4861889 aaacatgcatgtgtggatttgactggtgtttcaccacttgttggattaggggt 4861941  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 25375719 - 25375806
Alignment:
Q  13 gatgggtacaaggaaa-catgcatgtgtggatttgacc-gggtttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    |||||||| ||||||| |||||| | |||||||||||| ||||||||| ||| || ||||||||||| ||  ||||||||||||||||    
T  25375719 gatgggtagaaggaaaacatgcaagcgtggatttgaccagggtttcactactcgtcggattaggggtcagagcttttacggtaggaca 25375806  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 2764688 - 2764615
Alignment:
Q  24 ggaaacatgcatgtgtggatttgaccg-ggtttcaccacttgtgggattaggggttagtccttttacggtagga 96  Q
    ||||||||||||||||| | ||||  | |||||||||||||||||| ||||||||| || |||||| |||||||    
T  2764688 ggaaacatgcatgtgtgaacttgattgaggtttcaccacttgtgggtttaggggttggtgcttttatggtagga 2764615  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 26521695 - 26521621
Alignment:
Q  26 aaacatgcatgtgtggatttgaccgg-gtttcaccacttgtgggattaggggttagtccttttacggtaggacaa 99  Q
    |||||||||||| |||| ||||| || |||||| ||||||||||||||||||| || ||||||| ||||||||||    
T  26521695 aaacatgcatgtatggacttgactggagtttcatcacttgtgggattaggggtcagaccttttatggtaggacaa 26521621  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 3330157 - 3330084
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    |||| |||||||||||| ||||| ||| |||||||||||||||| ||||||||  |  ||||||||||||||||    
T  3330157 aaacgtgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacggtaggaca 3330084  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 25504500 - 25504427
Alignment:
Q  26 aaacatgcatgtgtggatttgaccg-ggtttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    |||||||||||| | || ||||| | |||||||||||||||||||||||| || || |||||||||||| ||||    
T  25504500 aaacatgcatgtatagacttgactgaggtttcaccacttgtgggattaggcgtcaggccttttacggtatgaca 25504427  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 31847294 - 31847221
Alignment:
Q  26 aaacatgcatgtgtggatttgacc-gggtttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||| |||||  ||||||||||||||||||| ||||||||  |  ||||||| ||||||||    
T  31847294 aaacatgcatgtgtggacttgactagggtttcaccacttgtgggtttaggggtgggggcttttacagtaggaca 31847221  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 50000825 - 50000898
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||| | ||||||  |  ||||||||||||||||    
T  50000825 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggttaaggggtgggggcttttacggtaggaca 50000898  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 53619793 - 53619720
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||| |||| |||  |  ||||||| ||||||||    
T  53619793 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttagaggtgggggcttttacagtaggaca 53619720  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 56462007 - 56462059
Alignment:
Q  26 aaacatgcatgtgtggatttgaccg-ggtttcaccacttgtgggattaggggt 77  Q
    ||||||||||||||||| ||||| | |||||||||| |||| |||||||||||    
T  56462007 aaacatgcatgtgtggacttgactgaggtttcaccatttgttggattaggggt 56462059  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 33691955 - 33692028
Alignment:
Q  26 aaacatgcatgtgtggatttgaccg-ggtttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||| ||||| | |||||||||||||||||| ||||||||  |  ||||||||||||||||    
T  33691955 aaacatgcatgtgtggacttgactgaggtttcaccacttgtgggtttaggggtcggggcttttacggtaggaca 33692028  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 13166810 - 13166851
Alignment:
Q  26 aaacatgcatgtgtggatttgaccgggtttcaccacttgtgg 67  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  13166810 aaacatgcatgtgtggacttgactgggtttcaccacttgtgg 13166851  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 35310655 - 35310582
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||| ||||  ||| |||||||||||||||| ||||||||  |  ||||||||||||||||    
T  35310655 aaacatgcatgtgtggacttgattggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggaca 35310582  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 38446373 - 38446300
Alignment:
Q  26 aaacatgcatgtgtggatttgaccg-ggtttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||| ||||| | |||||||||||||||||| ||||| ||| |  ||||||||||| ||||    
T  38446373 aaacatgcatgtgtggacttgactgaggtttcaccacttgtgggtttaggagttggggcttttacggtatgaca 38446300  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 27336900 - 27336848
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggt 77  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||    
T  27336900 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggt 27336848  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 43129744 - 43129668
Alignment:
Q  23 aggaaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    |||||| ||||||||||| | ||||| ||| ||||||||||||| |||||||||||  |  |||||||||| |||||    
T  43129744 aggaaaaatgcatgtgtgaaattgactggggtttcaccacttgttggattaggggtcggaacttttacggttggaca 43129668  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 28225207 - 28225133
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggacaa 99  Q
    ||||||||||||||||| ||||  ||| |||||| ||||||||| ||||| |||||  |||||||||||||||||    
T  28225207 aaacatgcatgtgtggacttgaatggggtttcactacttgtgggcttaggagttagggcttttacggtaggacaa 28225133  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 3825934 - 3825861
Alignment:
Q  26 aaacatgcatgtgtggatttgaccg-ggtttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||| ||||  | ||||||||| ||||||||||||||||| ||  ||||||||||| ||||    
T  3825934 aaacatgcatgtgtggacttgattgaggtttcaccccttgtgggattaggggtcaggacttttacggtatgaca 3825861  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 44686626 - 44686553
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||  |  |||||||| |||||||    
T  44686626 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcggggcttttacgataggaca 44686553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 17344845 - 17344774
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtagga 96  Q
    |||||||||||||| || ||||| ||| |||||| ||||||||||||||| || || |||||||| ||||||    
T  17344845 aaacatgcatgtgtagacttgactggggtttcacaacttgtgggattaggtgtcagaccttttaccgtagga 17344774  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 9685340 - 9685386
Alignment:
Q  50 gggtttcaccacttgtgggattaggggttagtccttttacggtagga 96  Q
    ||||||||||||||||||||||||| || || |||||||| ||||||    
T  9685340 gggtttcaccacttgtgggattaggtgtcagaccttttaccgtagga 9685386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 27502568 - 27502494
Alignment:
Q  26 aaacatgcatgtgtggatttg-accgggtttcaccacttgtgggattaggggttagtccttttacggtaggacaa 99  Q
    |||||||||||||||||  || |  ||||||||||||||||||| |||||||| ||  |||||||| ||||||||    
T  27502568 aaacatgcatgtgtggacctgaatggggtttcaccacttgtgggtttaggggtcagagcttttacgataggacaa 27502494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 4412966 - 4413039
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    |||||||| ||||| || ||||| ||| |||||||||||||||||||| | || || |||||||| ||||||||    
T  4412966 aaacatgcttgtgtagacttgactggggtttcaccacttgtgggattaagtgtcagaccttttaccgtaggaca 4413039  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 18744854 - 18744903
Alignment:
Q  26 aaacatgcatgtgtggatttgaccggg-tttcaccacttgtgggattagg 74  Q
    |||||||||||||| || ||||| ||| ||||||||||||||||||||||    
T  18744854 aaacatgcatgtgtagacttgactggggtttcaccacttgtgggattagg 18744903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 49621 - 49570
Alignment:
Q  26 aaacatgcatgtgtggatttgaccgggtttcaccacttgtgggattaggggt 77  Q
    ||||||||||||||||| ||||  | ||||||| ||||||||||||||||||    
T  49621 aaacatgcatgtgtggacttgattgagtttcactacttgtgggattaggggt 49570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 47464 - 47513
Alignment:
Q  50 gggtttcaccacttgtgggattaggggttagtccttttacggtaggacaa 99  Q
    |||||||||||||||||||||||||| ||    |||||||||||||||||    
T  47464 gggtttcaccacttgtgggattagggattgagacttttacggtaggacaa 47513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 33431 - 33383
Alignment:
Q  50 gggtttcaccacttgtgggattaggggttagtccttttacggtaggaca 98  Q
    |||||||||||||| |||||||||| ||  | |||||||||||||||||    
T  33431 gggtttcaccacttatgggattaggtgtcgggccttttacggtaggaca 33383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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