View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2890_low_9 (Length: 329)
Name: NF2890_low_9
Description: NF2890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2890_low_9 |
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| [»] scaffold0062 (1 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 5995 - 6327
Alignment:
| Q |
4 |
tggaacgctcatgactctgtggttcctccctctggtgagaccaaagctttcttcctggaggaaatcttgcaaaacctcctcctcgtcacataactaagaa |
103 |
Q |
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| T |
5995 |
tggaatgctcatgactctgtggttcctccctctggtgagaccaaacctttcctccttgaggacatcttgcaaagcctcctcctcgtcacataactatgaa |
6094 |
T |
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| Q |
104 |
ttgatgagtttctagccagctatatcattttgtacttgtaattttgtgtgtgcttttgtattatattg----------------cttctcttttatcaat |
187 |
Q |
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| T |
6095 |
ttgatgagtttatagccagctatatcattttgtacttgtaattttgtgtgtgcttttgtattatattgtgagtgtggagaattacttctcttttatcaat |
6194 |
T |
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| Q |
188 |
atatcatgtgcttgtaataatagttaataataaaatgcataatattttcattgaaaaacaacaannnnnnnacttttcaaattgaaattgaagttgtaat |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6195 |
atatcatgtgcttgtaataatagttaataataaaatgcataatattttcattgaaaaacaacaatttttttacttttcaaattgaaattgaagttgtaat |
6294 |
T |
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| Q |
288 |
caaataagaaatttattatgcaatctttcatct |
320 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6295 |
caaataagaaatttattatgcaatctttcatct |
6327 |
T |
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