View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2891_high_11 (Length: 201)
Name: NF2891_high_11
Description: NF2891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2891_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 29060044 - 29059874
Alignment:
| Q |
16 |
aatatgcataagtgtgattaattccaaacaatgaaacagtttaaataacggaaagtatagagattattaagcttgacaaatttcaatcataatcatcgat |
115 |
Q |
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| T |
29060044 |
aatatgcataagtgtgattaattctaaacaatgaaacagtttaaataacggaaagtatagagattattaagcttgacaaatttcaatcataatcatcgat |
29059945 |
T |
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| Q |
116 |
tattttccatgcagtttaaacaagatgcattttaaaatatgcatcg---attagtgctaccaagtgaatct |
183 |
Q |
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| T |
29059944 |
tatttttcatgcagtttaaacaagatgcattttaaaatatgcatagataattagtgctaccaagtgaatct |
29059874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 29061758 - 29061706
Alignment:
| Q |
11 |
cgaagaatatgcataagtgtgattaattccaaacaatgaaacagtttaaataa |
63 |
Q |
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| T |
29061758 |
cgaacaatatgcgtaagtgtgaataattccaaacaatggaacagtttaaataa |
29061706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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