View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2891_high_2 (Length: 377)
Name: NF2891_high_2
Description: NF2891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2891_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 31321442 - 31321795
Alignment:
| Q |
20 |
agttgctcttttccattgcaagatctaaaacccctttttctgacgtaaagaaaaatccatatctttttggtgtaaatggagggtttgtggttcttnnnnn |
119 |
Q |
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| T |
31321442 |
agttgctcttttcaattgcaagatctaaaaaccctttttctgacgtaaagaaaaatccatatctttttggtgtaaatggagggtttgtggttcttaaaaa |
31321541 |
T |
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| Q |
120 |
nntacattaacttgcacctcataaaaagtgaaatacatcaacttgcttatgg-attggaatttagaacttagtaagttggaattagaaatcacattaact |
218 |
Q |
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| T |
31321542 |
aatacattaacttgcacctcataaaaagtgaattacatcaacttgcttatgggattggaatttagaacttagtaagttggaattaggaatcacattaact |
31321641 |
T |
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| Q |
219 |
tgtatttatagcaaatacactataaatacaaaattgagaagtctgattagacacacaaaaattacataaatttacaaggtatgtgtagtggttagttcct |
318 |
Q |
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| T |
31321642 |
tgtatttatagcaaatacactataaatacagtattgagaagtctgattagacacacaaaaattacataaatttacaaggtatgtgtagtggttagttcct |
31321741 |
T |
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| Q |
319 |
agaggaggtgggtattgtcacggtacgcgtttttcatcatgctcttcatctcac |
372 |
Q |
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| T |
31321742 |
agaggaggtgggtattgtcatggtaggcgtttttcatcatgctcttcctctcac |
31321795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 31322182 - 31322222
Alignment:
| Q |
21 |
gttgctcttttccattgcaagatctaaaacccctttttctg |
61 |
Q |
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| T |
31322182 |
gttgctcttttccattgcaagatctaaaacccctttttctg |
31322222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 2131816 - 2131905
Alignment:
| Q |
195 |
ttggaattagaaatcacattaacttgtatttatagcaaatacactataaatacaaaattgagaagtctgattagacacacaaaaattaca |
284 |
Q |
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|||||||||| |||||||| |||||||||||| | ||||||| ||||||||| ||| | ||||| || ||||||||| |||||||| |
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| T |
2131816 |
ttggaattagcaatcacatcgacttgtatttattgtaaatacatcataaatacagctttgtgtagtctcataagacacacataaattaca |
2131905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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