View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2891_low_1 (Length: 422)
Name: NF2891_low_1
Description: NF2891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2891_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 3659715 - 3659353
Alignment:
| Q |
18 |
gttgaagatgacgaggaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaag |
117 |
Q |
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| T |
3659715 |
gttgaagatgacgaggaagtgctggtgggggacagtggaggatcaacacgtagtagcgatgacggagatatagtg---------------gcacaccaag |
3659631 |
T |
|
| Q |
118 |
agaagattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacatt |
217 |
Q |
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| T |
3659630 |
agaagattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcattacatt |
3659531 |
T |
|
| Q |
218 |
atattcatgtaaggctttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctc |
317 |
Q |
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| T |
3659530 |
atattcatgtaaggctttgtctaccctttgatttgtaatgtttgattggattctaggacaatttgattggacttagattgtttggtaattggtagatctc |
3659431 |
T |
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| Q |
318 |
atctgtgtgtctaattggcatatgattcataaatggatttgttatgttccactttaattggcatttagataattgtggt |
396 |
Q |
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| T |
3659430 |
atctgtgtgtctaattggcatttggtt-ataaatggatttgttatgttccacttcaattggaatttagataagtgtggt |
3659353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 33 - 377
Target Start/End: Complemental strand, 3653449 - 3653106
Alignment:
| Q |
33 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
132 |
Q |
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| T |
3653449 |
gaagttctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagtagtttcaagcacaccaagagaagattctgttct |
3653350 |
T |
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| Q |
133 |
ctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
232 |
Q |
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| T |
3653349 |
ctgctccactgccgcttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaacttttgacgtgaaatgtcgttacattatattcatgtaaggt |
3653250 |
T |
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| Q |
233 |
tttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatctgtgtgtctaat |
332 |
Q |
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| T |
3653249 |
tttgtttaccctttgatttgtaatgtttgat--tattctaggagaatttgactggacttagattgtttggtaactggtagatctcatctgcgtgtctaat |
3653152 |
T |
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| Q |
333 |
tggcatatgattc-ataaatggatttgttatgttccactttaattg |
377 |
Q |
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| T |
3653151 |
tggcatttggttctataaatggatttgttatgttccacttcaattg |
3653106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 33 - 290
Target Start/End: Complemental strand, 3657452 - 3657199
Alignment:
| Q |
33 |
gaagtgctggtggaggacagtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttct |
132 |
Q |
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|||||||||||||||||| ||| ||||||||| ||||| || | | | |||||| | |||||||||||||||| | ||| || |||||| ||||||||| |
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| T |
3657452 |
gaagtgctggtggaggacggtgaaggatcaacgcgtagcagtggttatggagattgactgaaagagcagtttcaggtacatcatgagaagcttctgttct |
3657353 |
T |
|
| Q |
133 |
ctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattatattcatgtaaggc |
232 |
Q |
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| T |
3657352 |
cagctgcattgccgcttaaaatggagagca----agacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaatta---tcatttaaggc |
3657260 |
T |
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| Q |
233 |
tttgt---ctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggact |
290 |
Q |
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| T |
3657259 |
tttgtttgtttacatttgatttgtaatgtttgactgtattctaggagaacttgattggact |
3657199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 193
Target Start/End: Complemental strand, 3649322 - 3649181
Alignment:
| Q |
52 |
gtggaggatcaacacgtagtagcgatgacggagatatagtgaaagagcagtttcaagcacaccaagagaagattctgttctctgctccattgccacttaa |
151 |
Q |
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| T |
3649322 |
gtggaggatcaacgcgtagtagtggttatggagattgagtgaaagatcagtttcaggtacatcatgagaagcttctgctctcagttctattgccacttaa |
3649223 |
T |
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| Q |
152 |
aatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
193 |
Q |
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| T |
3649222 |
gatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
3649181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 36164634 - 36164576
Alignment:
| Q |
135 |
gctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
193 |
Q |
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| T |
36164634 |
gctccattgccgcttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
36164576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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