View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2891_low_10 (Length: 203)
Name: NF2891_low_10
Description: NF2891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2891_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 131423 - 131598
Alignment:
| Q |
17 |
agatttccaattaaaggccatcccatgtcaccaggaggtagtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataa |
116 |
Q |
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| T |
131423 |
agatttccaattaaaggccatcccatgtcaccaggaggtagtggatattgtttgtttttaaatataagatcataataccatccattcaaattcctcataa |
131522 |
T |
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| Q |
117 |
ctttgctaacaaaaatgtaacatgccaacaaagtggcagctaacatccaaaaccattgaagttccattatattctt |
192 |
Q |
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| T |
131523 |
ctttgctaacaaaaatgtaacatgccaacaaagtggcagcaaacatccaaaaccattgaagttccattatattctt |
131598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 150722 - 150886
Alignment:
| Q |
20 |
tttccaattaaaggccatcccatgtcaccaggaggtagtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataactt |
119 |
Q |
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| T |
150722 |
tttccaataaaaggccatcccatatcaccgggaggcagtggatattgtttgtttttaaatttaagatcataataccatccattcaagttcctcataactt |
150821 |
T |
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| Q |
120 |
tgctaacaaaaatgtaacatgccaacaaagtggcagctaacatccaaaaccattgaagttccatt |
184 |
Q |
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| T |
150822 |
tgctaacaaaaatgtagcatgtcaacaaagtggcagcaaacatccataaccattgaagttccatt |
150886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 10303234 - 10303067
Alignment:
| Q |
17 |
agatttccaattaaaggccatcccatgtcaccaggaggtagtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataa |
116 |
Q |
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| T |
10303234 |
agatttccaactaatggccatcccatgtcaccaggaggcagtgggttttgttggtttttaaatttaagatcataataccattcattcaaattccacataa |
10303135 |
T |
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| Q |
117 |
ctttgctaacaaaaatgtaacatgccaacaaagtggcagctaacatccaaaaccattgaagttccatt |
184 |
Q |
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||||| ||||||||||||| ||||| || || |||||||| ||||||||| |||||||| ||||||| |
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| T |
10303134 |
ctttgttaacaaaaatgtagcatgcaaataacgtggcagcatacatccaaagccattgaaattccatt |
10303067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 3961816 - 3961934
Alignment:
| Q |
17 |
agatttccaattaaaggccatcccatgtcaccaggaggtagtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataa |
116 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||| | || |
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| T |
3961816 |
agattaccaattaaaggccatcccatatcaccaggaggtagtggaaattgtttgtttctaaatttaatatcataataccactcattcaaattccgaacaa |
3961915 |
T |
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| Q |
117 |
ctttgctaacaaaaatgta |
135 |
Q |
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|||||||||| |||||||| |
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| T |
3961916 |
ctttgctaactaaaatgta |
3961934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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