View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2891_low_4 (Length: 281)
Name: NF2891_low_4
Description: NF2891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2891_low_4 |
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| [»] scaffold1041 (2 HSPs) |
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| [»] scaffold0466 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 25359172 - 25359410
Alignment:
| Q |
17 |
acttcaatcaacaattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataata----gctt |
112 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25359172 |
acttcaaccaacaattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatatatagctt |
25359271 |
T |
|
| Q |
113 |
tgttattcttgaaaaaataatcttatgatctctgcttcaaaaaataatctcatgtgttttcctcaaaaatcattgatgaaaagaagttatttttgcctag |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25359272 |
tgttattcttgaaaaaa-aatcttatgatctctgcttcaagaaataatctcatgtgttttcttcaaaaatcattgatgaaaagaagttatttttgcctag |
25359370 |
T |
|
| Q |
213 |
tgaacttggctttgatcgatccacaaacgtccacatttat |
252 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |
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| T |
25359371 |
tgaacttggctttgatcgatccacaaccgtccacatttat |
25359410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 25399205 - 25399443
Alignment:
| Q |
17 |
acttcaatcaacaattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataata----gctt |
112 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25399205 |
acttcaaccaataattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatatatagctt |
25399304 |
T |
|
| Q |
113 |
tgttattcttgaaaaaataatcttatgatctctgcttcaaaaaataatctcatgtgttttcctcaaaaatcattgatgaaaagaagttatttttgcctag |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25399305 |
tgttattcttgaaaaaa-aatcttatgatctctgcttcaagaaataatctcatgtgttttcttcaaaaatcattgatgaaaagaagttatttttgcctag |
25399403 |
T |
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| Q |
213 |
tgaacttggctttgatcgatccacaaacgtccacatttat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
25399404 |
tgaacttggctttgatcgatccacaaacgtccacatttat |
25399443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 25495398 - 25495534
Alignment:
| Q |
134 |
cttatgatctctgcttcaaaaaataatctcatgtgttttcctcaaaaatcattgatgaaaagaagttatttttgcctagtgaacttggctttgatcgatc |
233 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
25495398 |
cttatgatctctgcttcaaaaaataaactcatgtgttttcttcaaaaatcattgatgaaaagaagttatttttacctagtgaacttggctttgaacgatc |
25495497 |
T |
|
| Q |
234 |
cacaaacgtccacatttataagcttgaacgacttctt |
270 |
Q |
| |
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|||| || |||||||||||||||||||| |||||||| |
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| T |
25495498 |
cacagacatccacatttataagcttgaatgacttctt |
25495534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 25662029 - 25662149
Alignment:
| Q |
151 |
aaaaaataatctcatgtgttttcctcaaaaa--tcattgatgaaaagaagttatttttgcctagtgaacttggctttgatcgatccacaaacgtccacat |
248 |
Q |
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|||||| || ||||||||||||| ||||||| |||| ||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25662029 |
aaaaaaaaaactcatgtgttttcttcaaaaaaatcatcgatgaaa-gaagttatttttacctagtgaagttggctttgatcgatccacaaacgtccacat |
25662127 |
T |
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| Q |
249 |
ttataagcttgaacgacttctt |
270 |
Q |
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|||||| ||||||||||||||| |
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| T |
25662128 |
ttataatcttgaacgacttctt |
25662149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 25618390 - 25618493
Alignment:
| Q |
107 |
tagctttgttattcttgaaaaaataat----cttatgatctctgcttcaaaaaataatctcatgtgttttcctcaaaaatcattgatgaaaagaagttat |
202 |
Q |
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||||||||||||| |||||||||||| |||||||| | |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25618390 |
tagctttgttattgttgaaaaaataaaaaaacttatgatatttgcttcaagaaataaactcatgtgttttcttcaaaaatcattgatgaaaagaagttat |
25618489 |
T |
|
| Q |
203 |
tttt |
206 |
Q |
| |
|
|||| |
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|
| T |
25618490 |
tttt |
25618493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 25495282 - 25495366
Alignment:
| Q |
41 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaaaaaa |
129 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||||||||||| |
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| T |
25495282 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgcaagctggttctctcgattgtacctttgttattcttgaaaaaa |
25495366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 25651231 - 25651366
Alignment:
| Q |
41 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaaaaaat---------- |
130 |
Q |
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|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||| |
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| T |
25651231 |
agttaattcacatcttcggtacgtccatatagctttta----tctgcaagctggttctctcgatagtacctttgttattcttgaaaaaataaaataaaaa |
25651326 |
T |
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| Q |
131 |
aatcttatgatctctgcttcaaaaaataatctcatgtgtt |
170 |
Q |
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|| ||||||||||||||||||| |||||| |||||||||| |
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| T |
25651327 |
aaacttatgatctctgcttcaagaaataaactcatgtgtt |
25651366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 270
Target Start/End: Original strand, 25620801 - 25620832
Alignment:
| Q |
239 |
acgtccacatttataagcttgaacgacttctt |
270 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25620801 |
acgtccacatttataagcttgaacgacttctt |
25620832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 426 - 283
Alignment:
| Q |
41 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaa-aaaataatcttatg |
139 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |
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| T |
426 |
agttaatccatatcctcggtacgtccatatagctttta----tctgcaagctggttctctccataatagctttgttattcttgaaaaaaaaaaacttatg |
331 |
T |
|
| Q |
140 |
atctctgcttcaaaaaataatctcatgtgttttcctcaaaaatcattgat |
189 |
Q |
| |
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||||||||||||| |||||||||| |||||||| ||||||||||||||| |
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| T |
330 |
atctctgcttcaagaaataatctc--gtgttttcttcaaaaatcattgat |
283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 287 - 241
Alignment:
| Q |
224 |
ttgatcgatccacaaacgtccacatttataagcttgaacgacttctt |
270 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
287 |
ttgatcgatccacatacgtccacatttataagcttgaacgacttctt |
241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 5911 - 5818
Alignment:
| Q |
177 |
aaaaatcattgatgaaaagaagttatttttgcctagtgaacttggctttgatcgatccacaaacgtccacatttataagcttgaacgacttctt |
270 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||||| |||||||| |
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| T |
5911 |
aaaaatcattgatgaaaataagttatttttacctagtgaacttggctttgaacgatccacagacatccacatttataagcttgaatgacttctt |
5818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 6070 - 5996
Alignment:
| Q |
41 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttatt |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || || |||||||||| |
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| T |
6070 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgtaagctggttctctcgattttacctttgttatt |
5996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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