View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2891_low_6 (Length: 245)
Name: NF2891_low_6
Description: NF2891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2891_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 9619921 - 9619689
Alignment:
| Q |
6 |
atatcaacaagaactctcatggagtacaacttgctaaggagttaactgttcctgatctcatggcaattggtaattcannnnnnnnnncttcctatctctt |
105 |
Q |
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| T |
9619921 |
atatcaacaagaactctcatggagtacaacttgctaaggagttaactgttcctgatctcatggcaattggtaattcattttttttttcttcctatctctt |
9619822 |
T |
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| Q |
106 |
gaaatgttgttgtttagataactttcaataannnnnnnnnatctgggtcagggtctggaagggatctgatcaatttcaatttcaactttcatcttcactt |
205 |
Q |
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| T |
9619821 |
gaaatgctgttgtttagataactttcaataa-tttttttcatctgggtcagggtctggaagggatctgatcaatttcagtttcaactttcattttcactt |
9619723 |
T |
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| Q |
206 |
ttcagaccgttgttttgttaatgtttttagtgttaac |
242 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
9619722 |
ttcag---tttgttttgttaatgtttttagtgttaac |
9619689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 9634089 - 9633984
Alignment:
| Q |
20 |
tctcatggagtacaacttgctaaggagttaactgttcctgatctcatggcaattggtaattcannnnnnnnnncttcctatctcttgaaatgttgttgtt |
119 |
Q |
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| T |
9634089 |
tctcatggagtgcaacttgctaaggagttaactgttcctcatctcatggcaattggtaattc---------tttttcctatctcttgaaatgttgttgtt |
9633999 |
T |
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| Q |
120 |
tagataactttcaat |
134 |
Q |
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| T |
9633998 |
tagatgattttcaat |
9633984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 9642248 - 9642188
Alignment:
| Q |
22 |
tcatggagtacaacttgctaaggagttaactgttcctgatctcatggcaattggtaattca |
82 |
Q |
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| T |
9642248 |
tcatggagtgcaacttgctaaggagttaactattcctcatcttatggcaattggtaattca |
9642188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 9659327 - 9659267
Alignment:
| Q |
22 |
tcatggagtacaacttgctaaggagttaactgttcctgatctcatggcaattggtaattca |
82 |
Q |
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||||||||| ||||||| ||||||||||||| ||||| |||| |||||||||||||||||| |
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| T |
9659327 |
tcatggagtgcaacttgttaaggagttaactattcctcatcttatggcaattggtaattca |
9659267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 9642124 - 9642075
Alignment:
| Q |
191 |
ctttcatcttcacttttcagaccgttgttttgttaatgtttttagtgttaac |
242 |
Q |
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| T |
9642124 |
ctttcattttcacttttcagac--ttgttttgtaaatttttttagtgttaac |
9642075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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