View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2892_high_15 (Length: 206)

Name: NF2892_high_15
Description: NF2892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2892_high_15
NF2892_high_15
[»] chr2 (13 HSPs)
chr2 (15-163)||(42148680-42148828)
chr2 (84-163)||(39062889-39062968)
chr2 (106-163)||(35029873-35029930)
chr2 (115-163)||(34228147-34228195)
chr2 (63-163)||(34229043-34229143)
chr2 (116-163)||(4855361-4855408)
chr2 (114-163)||(6205443-6205492)
chr2 (127-164)||(39063804-39063841)
chr2 (166-202)||(38823311-38823347)
chr2 (117-156)||(39064611-39064650)
chr2 (84-157)||(39062225-39062298)
chr2 (63-164)||(40320240-40320341)
chr2 (83-163)||(4854473-4854553)
[»] chr3 (6 HSPs)
chr3 (31-163)||(44312305-44312437)
chr3 (39-164)||(44311392-44311516)
chr3 (78-162)||(52102552-52102636)
chr3 (119-163)||(34329152-34329196)
chr3 (84-158)||(40810275-40810349)
chr3 (127-164)||(23513687-23513724)
[»] chr1 (8 HSPs)
chr1 (77-164)||(10469605-10469692)
chr1 (106-164)||(7338810-7338868)
chr1 (116-158)||(49618303-49618345)
chr1 (126-163)||(1764516-1764553)
chr1 (115-160)||(7338012-7338057)
chr1 (63-164)||(30430393-30430494)
chr1 (106-163)||(41459450-41459507)
chr1 (127-163)||(27891319-27891355)
[»] chr8 (12 HSPs)
chr8 (84-166)||(6462605-6462687)
chr8 (84-164)||(42578708-42578788)
chr8 (115-165)||(38443693-38443743)
chr8 (117-160)||(42503029-42503072)
chr8 (123-163)||(34587361-34587401)
chr8 (84-163)||(6461880-6461959)
chr8 (120-163)||(42503947-42503990)
chr8 (106-163)||(12203354-12203411)
chr8 (106-163)||(12447782-12447839)
chr8 (119-164)||(38443623-38443668)
chr8 (116-164)||(11519349-11519397)
chr8 (165-201)||(28583782-28583818)
[»] chr6 (2 HSPs)
chr6 (45-163)||(18066239-18066356)
chr6 (115-164)||(34260115-34260164)
[»] chr4 (6 HSPs)
chr4 (63-169)||(39310390-39310496)
chr4 (117-163)||(31414870-31414916)
chr4 (117-163)||(32159544-32159590)
chr4 (84-163)||(39311361-39311440)
chr4 (117-158)||(32158804-32158845)
chr4 (127-163)||(5469996-5470032)
[»] chr5 (3 HSPs)
chr5 (84-163)||(120073-120152)
chr5 (53-159)||(126217-126322)
chr5 (115-158)||(2639717-2639760)
[»] chr7 (5 HSPs)
chr7 (84-163)||(35753054-35753137)
chr7 (116-163)||(25674893-25674940)
chr7 (169-202)||(26582565-26582598)
chr7 (116-164)||(25675768-25675816)
chr7 (127-167)||(48204143-48204183)
[»] scaffold0098 (1 HSPs)
scaffold0098 (116-163)||(52264-52311)
[»] scaffold0330 (1 HSPs)
scaffold0330 (117-159)||(13264-13306)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 42148828 - 42148680
Alignment:
Q  15 gtgattgatttctatatttttattacctggatcctttttattcttcatcttttaatgttagccgttagatttattattgccatatgtcatccatctaagt 114  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| | |||||||||||||| |||||||||    
T  42148828 gtgattgctttctatttttttattacctggatcctttttgttcttcatcttttaatgataaccgttagatttaattttgccatatgtcattcatctaagt 42148729  T
Q  115 cttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  42148728 cttgaaatgggataaattgagaaaacataaatggagcaaagatggactc 42148680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 39062889 - 39062968
Alignment:
Q  84 tttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| |||||| ||||||| |||||| | |||||||| | |||||||||  ||||||||||||| |||||||||||||    
T  39062889 tttattgttgccacatgtcatacatctatgacttgaaattgggtaaattgaacaaacataaatggaacaaagatggactc 39062968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 35029873 - 35029930
Alignment:
Q  106 catctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| | |||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  35029873 catctatgacttgaaatggggtaaattgaggaaacctaaatggagcaaagatagactc 35029930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 34228195 - 34228147
Alignment:
Q  115 cttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  34228195 cttgaaatggggtaaattgaggaatcttaaatggagcaaagatggactc 34228147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 34229043 - 34229143
Alignment:
Q  63 cttttaatgttagccgttagatttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggact 162  Q
    |||||||| | |||| || | |||||| || ||| ||||||  |||||| | ||| |||||| ||||||||||||| | |||||||||||||||||||||    
T  34229043 cttttaatctcagccattggttttattttttccacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggagcaaagatggact 34229142  T
Q  163 c 163  Q
    |    
T  34229143 c 34229143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 4855361 - 4855408
Alignment:
Q  116 ttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| ||||||||||||| |||||||||||||||||||||| ||||    
T  4855361 ttgaaaaggagtaaattgagcaaacataaatggagcaaagatgaactc 4855408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 6205443 - 6205492
Alignment:
Q  114 tcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||| |||||| ||||||||||||| | ||||||||||||||||||||||    
T  6205443 tcttaaaatggggtaaattgaggaagcctaaatggagcaaagatggactc 6205492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 39063841 - 39063804
Alignment:
Q  127 taaattgaggaaacataaatggagcaaagatggactca 164  Q
    |||||||||||||| |||||||||||||||||||||||    
T  39063841 taaattgaggaaacctaaatggagcaaagatggactca 39063804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 38823311 - 38823347
Alignment:
Q  166 agattaaaagacatcattacatgctctctccactctc 202  Q
    |||||||||||||||||| ||||||||||||||||||    
T  38823311 agattaaaagacatcattgcatgctctctccactctc 38823347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 39064611 - 39064650
Alignment:
Q  117 tgaaatggagtaaattgaggaaacataaatggagcaaaga 156  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  39064611 tgaaaaggaataaattgaggaaacataaatggagcaaaga 39064650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 39062298 - 39062225
Alignment:
Q  84 tttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagat 157  Q
    |||||| |||||| ||||||| |||||| | ||||||||||  ||||||||  ||||  |||||||||||||||    
T  39062298 tttatttttgccacatgtcatacatctatgacttgaaatgggataaattgaacaaaccaaaatggagcaaagat 39062225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 40320341 - 40320240
Alignment:
Q  63 cttttaatgttagccgttagatttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggact 162  Q
    |||||||| | |||| ||||||||||| || |||| |||||| |||||| |  |||||| ||| ||||| ||| ||   ||||||||||||||||| |||    
T  40320341 cttttaatttcagcccttagatttatttttaccatgtgtcatgcatctatgcattgaaaaggattaaatggagcaaggctaaatggagcaaagatgaact 40320242  T
Q  163 ca 164  Q
    ||    
T  40320241 ca 40320240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 4854553 - 4854473
Alignment:
Q  83 atttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    ||||||| || ||||||||||  ||||||    |||||| ||||||||| |||  ||||||||||||||||||||| ||||    
T  4854553 atttatttttaccatatgtcacacatctatacattgaaaaggagtaaatggagtcaacataaatggagcaaagatgaactc 4854473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 44312305 - 44312437
Alignment:
Q  31 tttttattacctggatcctttttattcttcatcttttaatgttagccgttagatttattattgccatatgtcatccatctaagtcttgaaatggagtaaa 130  Q
    |||||||||||| |||||||||||||||||||||||||||   | |||||| ||||| | ||||||||||||||| ||||||||||| |||||| |||||    
T  44312305 tttttattacctagatcctttttattcttcatcttttaatcacaaccgttatatttaattttgccatatgtcatcaatctaagtcttaaaatggggtaaa 44312404  T
Q  131 ttgaggaaacataaatggagcaaagatggactc 163  Q
    |||||||||||||||||||||||||||||||||    
T  44312405 ttgaggaaacataaatggagcaaagatggactc 44312437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 44311516 - 44311392
Alignment:
Q  39 acctggatcctttttattcttcatcttttaatgttagccgttagatttattattgcc-atatgtcatccatctaagtcttgaaatggagtaaattgagga 137  Q
    |||| |||||||||||||||||||||||||||   | |||||| |||||  |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  44311516 acctagatcctttttattcttcatcttttaatcacaaccgttaaattta--attgcccatatgtcatccatctaagtcttgaaatggaataaattgagga 44311419  T
Q  138 aacataaatggagcaaagatggactca 164  Q
    ||||||||| |||||||||| ||||||    
T  44311418 aacataaatagagcaaagatagactca 44311392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 52102636 - 52102552
Alignment:
Q  78 gttagatttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggact 162  Q
    |||||||||| | |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  52102636 gttagatttaattttgccatatgtcattcatctaagtcttaaaatggagtaaattgaggaaacataaattgagcaaagatggact 52102552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 34329152 - 34329196
Alignment:
Q  119 aaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  34329152 aaatggagtaaattgagcaaaaataaatgaagcaaagatggactc 34329196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 40810275 - 40810349
Alignment:
Q  84 tttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatg 158  Q
    |||||| ||||||| |||||  |||| | | ||| ||||||  |||||||||||||| |||||||||||||||||    
T  40810275 tttatttttgccatgtgtcacacatccatgacttaaaatgggataaattgaggaaacttaaatggagcaaagatg 40810349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 23513724 - 23513687
Alignment:
Q  127 taaattgaggaaacataaatggagcaaagatggactca 164  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  23513724 taaattgagcaaagataaatggagcaaagatggactca 23513687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 10469605 - 10469692
Alignment:
Q  77 cgttagatttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactca 164  Q
    ||||||||||| | ||| ||| |||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  10469605 cgttagatttaattttgtcatgtgtcattcatctaagtcttaaaatggagtaaattgaggaaacataaattgagcaaagatggactca 10469692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 7338810 - 7338868
Alignment:
Q  106 catctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactca 164  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7338810 catctatgacttgaaatggagtaaattgaggaaacataaatggagcaaagatggactca 7338868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 49618345 - 49618303
Alignment:
Q  116 ttgaaatggagtaaattgaggaaacataaatggagcaaagatg 158  Q
    ||||||||| ||||||||||||| | |||||||||||||||||    
T  49618345 ttgaaatggggtaaattgaggaagcctaaatggagcaaagatg 49618303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 1764553 - 1764516
Alignment:
Q  126 gtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  1764553 gtaaattgagcaaacttaaatggagcaaagatggactc 1764516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 7338057 - 7338012
Alignment:
Q  115 cttgaaatggagtaaattgaggaaacataaatggagcaaagatgga 160  Q
    ||||||||||  ||||||||| ||| ||||||||||||||||||||    
T  7338057 cttgaaatgggataaattgagaaaatataaatggagcaaagatgga 7338012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 30430393 - 30430494
Alignment:
Q  63 cttttaatgttagccgttagatttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggact 162  Q
    |||||||| ||| || || |||||||| |||||| |||||||  ||||| |  ||| || ||||||||| ||||||   ||||||||||||||||| |||    
T  30430393 cttttaatcttaaccctttgatttatttttgccacatgtcatttatctatgcattggaaaggagtaaatggaggaatactaaatggagcaaagatgaact 30430492  T
Q  163 ca 164  Q
    ||    
T  30430493 ca 30430494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 41459450 - 41459507
Alignment:
Q  106 catctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| || ||||||  |||||||||||  |||||||||||||||||||||| ||||    
T  41459450 catctatgtattgaaaatgagtaaattgaacaaacataaatggagcaaagatgaactc 41459507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 27891319 - 27891355
Alignment:
Q  127 taaattgaggaaacataaatggagcaaagatggactc 163  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  27891319 taaattgagtaaagataaatggagcaaagatggactc 27891355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 8e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 6462605 - 6462687
Alignment:
Q  84 tttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactcaga 166  Q
    |||||| |||||| ||||||| |||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  6462605 tttatttttgccacatgtcatacatctaggacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactcaga 6462687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 42578788 - 42578708
Alignment:
Q  84 tttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactca 164  Q
    |||||| |||||| ||||||| |||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  42578788 tttatttttgccacatgtcatacatctatgacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactca 42578708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 38443743 - 38443693
Alignment:
Q  115 cttgaaatggagtaaattgaggaaacataaatggagcaaagatggactcag 165  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  38443743 cttgaaatggggtaaattgtggaaacttaaatggagcaaagatggactcag 38443693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 42503072 - 42503029
Alignment:
Q  117 tgaaatggagtaaattgaggaaacataaatggagcaaagatgga 160  Q
    |||||||| ||||||||||||||| |||||||||||||||||||    
T  42503072 tgaaatggggtaaattgaggaaacttaaatggagcaaagatgga 42503029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 34587361 - 34587401
Alignment:
Q  123 ggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  34587361 ggagtaaattgaggaaacttaaatggagcaaagatgaactc 34587401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 6461959 - 6461880
Alignment:
Q  84 tttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| |||||| ||||||| ||||||   ||||||||| | ||||||||| ||||  |||||||||||||||| ||||    
T  6461959 tttatttttgccacatgtcatacatctataacttgaaatgaaataaattgagcaaaccgaaatggagcaaagatgaactc 6461880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 42503947 - 42503990
Alignment:
Q  120 aatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    ||||| ||||||||||||| | ||||||||||||||||||||||    
T  42503947 aatggggtaaattgaggaagcctaaatggagcaaagatggactc 42503990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 12203354 - 12203411
Alignment:
Q  106 catctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| | ||||||||||  |||||||||||||   |||||||||||||||||||||    
T  12203354 catctatgacttgaaatggtataaattgaggaaaatgaaatggagcaaagatggactc 12203411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 12447782 - 12447839
Alignment:
Q  106 catctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| | ||||||||||  |||||||||||||   |||||||||||||||||||||    
T  12447782 catctatgacttgaaatggtataaattgaggaaaatgaaatggagcaaagatggactc 12447839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 38443623 - 38443668
Alignment:
Q  119 aaatggagtaaattgaggaaacataaatggagcaaagatggactca 164  Q
    |||||| |||||| ||| |||| |||||||||||||||||||||||    
T  38443623 aaatggggtaaatggagcaaacttaaatggagcaaagatggactca 38443668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 11519397 - 11519349
Alignment:
Q  116 ttgaaatggagtaaattgaggaaacataaatggagcaaagatggactca 164  Q
    ||||||||| ||||||||| ||||| ||||| ||||||||||| |||||    
T  11519397 ttgaaatggggtaaattgaagaaacctaaattgagcaaagatgaactca 11519349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 28583782 - 28583818
Alignment:
Q  165 gagattaaaagacatcattacatgctctctccactct 201  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  28583782 gagattaaaagacatcatcacatgctttctccactct 28583818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 18066239 - 18066356
Alignment:
Q  45 atcctttttattcttcatcttttaatgttagccgttagatttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataa 144  Q
    |||||| |||||||| ||||||||||   |||||||||| ||||| |||||| ||||||  |||||| | ||| |||||| ||||||||||||||   ||    
T  18066239 atccttattattcttgatcttttaatcacagccgttagacttatttttgccaaatgtcagacatctatgacttaaaatgg-gtaaattgaggaaagcaaa 18066337  T
Q  145 atggagcaaagatggactc 163  Q
    |||||||||||||| ||||    
T  18066338 atggagcaaagatgaactc 18066356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 34260164 - 34260115
Alignment:
Q  115 cttgaaatggagtaaattgaggaaacataaatggagcaaagatggactca 164  Q
    |||||||||| ||||||||||||||   ||||||||||||||||||||||    
T  34260164 cttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 34260115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 39310496 - 39310390
Alignment:
Q  63 cttttaatgttagccgttagatttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggact 162  Q
    |||||||| | |||| || | |||||| || ||| ||||||| ||||||   ||||||||||  |||||||||||| | |||||||||||||||||||||    
T  39310496 cttttaatctcagccattggttttattttttccacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaagatggact 39310397  T
Q  163 cagagat 169  Q
    | |||||    
T  39310396 cggagat 39310390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 31414870 - 31414916
Alignment:
Q  117 tgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  31414870 tgaaaaggaataaattgaggaaacttaaatggagcaaagatggactc 31414916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 32159544 - 32159590
Alignment:
Q  117 tgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  32159544 tgaaatggggtaaattgaggaaacctaaatggagcaaagatgcactc 32159590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 39311361 - 39311440
Alignment:
Q  84 tttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| || ||| ||||||  |||||| | ||| |||||| |||||||||| || | ||||||||||||||||||||||    
T  39311361 tttattttttccacatgtcacacatctatgacttaaaatggggtaaattgagaaatcttaaatggagcaaagatggactc 39311440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 32158845 - 32158804
Alignment:
Q  117 tgaaatggagtaaattgaggaaacataaatggagcaaagatg 158  Q
    |||||||| ||||||||||||||| ||||||||||| |||||    
T  32158845 tgaaatggggtaaattgaggaaacctaaatggagcagagatg 32158804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 5469996 - 5470032
Alignment:
Q  127 taaattgaggaaacataaatggagcaaagatggactc 163  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  5469996 taaattgagcaaacttaaatggagcaaagatggactc 5470032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 120152 - 120073
Alignment:
Q  84 tttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| || ||||||||||  ||||||   |||||||||| ||||||||||||||  ||||||||||||||||| ||||    
T  120152 tttattttttccatatgtcacgcatctataacttgaaatggggtaaattgaggaaagctaaatggagcaaagatgaactc 120073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 126217 - 126322
Alignment:
Q  53 tattcttcatcttttaatgttagccgttagatttattattgccatatgtcatccatctaagtcttgaaatggagtaaattgaggaaacataaatggagca 152  Q
    ||||||| ||||||||||  || |||||||||||| | ||||||||| |||  ||||||   ||| |||||| |||||||||| |||| |||||||||||    
T  126217 tattcttgatcttttaatcataaccgttagatttagttttgccatatatcacacatctataacttaaaatgg-gtaaattgagaaaacctaaatggagca 126315  T
Q  153 aagatgg 159  Q
    || ||||    
T  126316 aaaatgg 126322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 2639760 - 2639717
Alignment:
Q  115 cttgaaatggagtaaattgaggaaacataaatggagcaaagatg 158  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||    
T  2639760 cttgaaatggggtaaattgagcaaaaataaatggagcaaagatg 2639717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 35753054 - 35753137
Alignment:
Q  84 tttattattgccatatgtcatccatctaagtcttgaaatggagtaaat----tgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| |||||| ||||||| |||||| | | |||||||| ||||||    |||| |||||||||||||||||||||||||||    
T  35753054 tttatttttgccacatgtcatacatctatgacgtgaaatggggtaaataaattgagtaaacataaatggagcaaagatggactc 35753137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 25674940 - 25674893
Alignment:
Q  116 ttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| ||||||||||||| ||||| |||||||||||||||| ||||    
T  25674940 ttgaaaaggagtaaattgagcaaacacaaatggagcaaagatgaactc 25674893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 26582598 - 26582565
Alignment:
Q  169 ttaaaagacatcattacatgctctctccactctc 202  Q
    ||||||||||||||| ||||||||||||||||||    
T  26582598 ttaaaagacatcattgcatgctctctccactctc 26582565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 25675768 - 25675816
Alignment:
Q  116 ttgaaatggagtaaattgaggaaacataaatggagcaaagatggactca 164  Q
    |||||| ||||||||| |||  ||||||||||||||||||||| |||||    
T  25675768 ttgaaaaggagtaaatggagccaacataaatggagcaaagatgaactca 25675816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 48204183 - 48204143
Alignment:
Q  127 taaattgaggaaacataaatggagcaaagatggactcagag 167  Q
    ||||| ||| |||| ||||||||||||||||||||||||||    
T  48204183 taaatggagcaaacttaaatggagcaaagatggactcagag 48204143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 52311 - 52264
Alignment:
Q  116 ttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 163  Q
    |||||| ||||||||| ||||||||| |||||||||||||||| ||||    
T  52311 ttgaaaaggagtaaatggaggaaacaaaaatggagcaaagatgaactc 52264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 13264 - 13306
Alignment:
Q  117 tgaaatggagtaaattgaggaaacataaatggagcaaagatgg 159  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||    
T  13264 tgaaaaggaataaattgaggaaacctaaatggagcaaagatgg 13306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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