View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2892_high_2 (Length: 847)
Name: NF2892_high_2
Description: NF2892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2892_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 2530190 - 2530757
Alignment:
| Q |
1 |
ctttcaaatccgttgaataccagccgaaaccaaaactacctcagaaagaagcatgataaacaaacataaccatatggtattcacaatatggaaaagaggc |
100 |
Q |
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| T |
2530190 |
ctttccaatccgttgaatactagccgaaaccaaaactacttctgacaaaagtatgatacacaaacataaccatagggtattcacaatatggaaaagaggc |
2530289 |
T |
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| Q |
101 |
caatgatttctcatggttttgtagttctactccaacagccaattcttatctgaggannnnnnncggtcttagagttcggagataagtaaagtatgaccga |
200 |
Q |
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| T |
2530290 |
caatgatttctcatggttttgtagttctactccaacagccaattcttatctgaggatttttttcggtcttagagttcggagataagtaaagtatgaccga |
2530389 |
T |
|
| Q |
201 |
gaattgttgtagtcaaggttcgaattctagtacttctatgtaaggaagaattgtttgactagaaactcattaaccaccccttgtgaaattaccacttggt |
300 |
Q |
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| T |
2530390 |
gaattgttgtagtcaaggttcgaattctagtacttctatgtgaggaagaattgtttgactagaaactcatcaaccaccctttgtgaaatt---acttggt |
2530486 |
T |
|
| Q |
301 |
tct--tatgaggtatttatatatcataaagaagcaaagc-aaaaaactatggaattcataaacaagagagaagagggttgaaataggacataaacatgtt |
397 |
Q |
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| T |
2530487 |
tcttatatgaggtatttatatatcataaagaagcaaagcaaaaaaactatggaattcataaacaagagagaagagggttgaaataggacataaacatgtt |
2530586 |
T |
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| Q |
398 |
catagccatacatgttttaacatgagtttgtatnnnnnnnnnnnnncaactttttaaggtggattttctaccttgaccacatagtggaaaagcaatatgg |
497 |
Q |
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| T |
2530587 |
catagccatacatgttttaacatgagtttgtat-aaaaaacaaaaacaactttttaaggtggattttctaccttgaccacatagtggaaaagcaatatgg |
2530685 |
T |
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| Q |
498 |
cataaac-nnnnnnntggaattcatgaatatgatagaagagggttgaattatgttatcttggttacatagtg |
568 |
Q |
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| T |
2530686 |
cataaacaaaaaaaatggaattcatgaatatgatagaagagggttgaattatgttatcttggttacatagtg |
2530757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 642 - 833
Target Start/End: Original strand, 2530831 - 2531021
Alignment:
| Q |
642 |
ctttgttgacacttgaattgaccaacaaaagtttacctcaacatgatgagtgagtattggtttcacacatgatgaagaaagaacagaaaaattaagcaag |
741 |
Q |
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| T |
2530831 |
ctttgttgacacttgaattgaccaacaaaagtttacctcaaaatgatgagtgagtcttggtttcacacatgatgaagaaagaacagaaaaattaagcaag |
2530930 |
T |
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| Q |
742 |
aagattatggtaagaacatttgaagaaatgtactattgatttgtttgactatgaaacaatggattatttgtgcacgtgaagtgtgatgaaac |
833 |
Q |
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| T |
2530931 |
aagattatggtaagaacatttgaagaaatgtactattga-ttgtttgactatgaaacaatggattatttgtgcacgtgaagtgtgatgaaac |
2531021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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