View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2892_high_6 (Length: 410)
Name: NF2892_high_6
Description: NF2892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2892_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 20 - 400
Target Start/End: Original strand, 14442885 - 14443264
Alignment:
| Q |
20 |
acataacaccgccttgcgaaaatttcaaaactaaatacaaagatcgcaatcacaatttaaaacaatccttcnnnnnnnnctgagcttatctcagaaaagt |
119 |
Q |
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| T |
14442885 |
acataacaccgccttgcgaaaatttcaaaactaaatacaaagatcgcaatcacaatttaaaacaatccttcttttttt-ctgagcttatctcagaaaagt |
14442983 |
T |
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| Q |
120 |
ttagtgagttatataattgaaataattgaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagag |
219 |
Q |
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| T |
14442984 |
ttagtgagttatataattgaaataattgaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagag |
14443083 |
T |
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| Q |
220 |
tgcatacaaaagagcattgaaaagttgagtagagccatttcctaacactatgaacttatcttttgtgacaacattcccaaccacattgtgaatcctcaaa |
319 |
Q |
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| T |
14443084 |
tgcatacaaaagagcattgaaaagttgagtagagccatttcctaacactatgaacttatcttttgtgacaacattaccaaccacattgtgaatcctcaaa |
14443183 |
T |
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| Q |
320 |
atagcttccctcatttgtggcaacatataccaacataagttgttaccatcaccaaagtaactcataaattcttctcctttg |
400 |
Q |
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| T |
14443184 |
atagcttccctcatttgtggcaacatataccaacataagttgttaccatcaccaaagtaactcataaattcttctcctttg |
14443264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 300
Target Start/End: Original strand, 14433594 - 14433747
Alignment:
| Q |
147 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttg |
246 |
Q |
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| T |
14433594 |
gaaagatcaccgagtaataaggagtaggagaaataacattgatagggtgatcagggacatctaaaggagacaaagcgaacaaagcagcttggaagagttg |
14433693 |
T |
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| Q |
247 |
agtagagccatttcctaacactatgaacttatcttttgtgacaacattcccaac |
300 |
Q |
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| T |
14433694 |
agaagagccatttccaacaactatgtatttatctttggtcacagcatttccaac |
14433747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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