View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2892_low_1 (Length: 876)
Name: NF2892_low_1
Description: NF2892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2892_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 665; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 19 - 743
Target Start/End: Original strand, 50388522 - 50389254
Alignment:
| Q |
19 |
ctgttggtacacaagcaaatgtaaataggaggaaaacttcattttcgttcagacaaatataaaggatcagttgtttagatactctacaaaaaattcatat |
118 |
Q |
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| T |
50388522 |
ctgttggtacacaagcaaatgtaaataggaggaaaacttcattttcgttcagacaaatataaaggatcagttgtttagatactctacaaaaaattcatat |
50388621 |
T |
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| Q |
119 |
ttacgtacgatcaaatatttgttttgatactttgtaaatggaaattgatcatttttaaaatgaaattg----------tcattcattttcacttgaagta |
208 |
Q |
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| T |
50388622 |
ttacgtacgatcaaatatttgttttgatactttgtaaatggaaattgatcatttttaaaatgaaattaaatctcaaaatcattcattttcacttgaagta |
50388721 |
T |
|
| Q |
209 |
taatataaccaactagaattcagtttctctcacatgattcatctgctagagcctcagaaatcaaagatataatttggaataattaaaattgtttctttga |
308 |
Q |
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| T |
50388722 |
taatataaccatctagaattcagtttctctcacatgattcatctgctagagcctcagaaatcaaagatataatttggaataattaaaattgtttctttga |
50388821 |
T |
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| Q |
309 |
ataaaagataatttggctaggcaaggtgttttaaattttggattctcttgcttgtgttggaggttgtggttatgatgaaaacatttattttttaatgtcc |
408 |
Q |
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| T |
50388822 |
ataaaagataatttggctaggcaaggtgttttaaattttggattctcttgcttgtgttggaggttgtggttgtgatgaaaacatttattttttaatgtcc |
50388921 |
T |
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| Q |
409 |
tatttttagatgaatttggaagttaatcttaaagtggttgagcatcccatgcgctttatcaaatataactagtgaccatgctccacagttgtgtggcttt |
508 |
Q |
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| T |
50388922 |
tatttttagatgaatttggaagttaatcttaaagtggttgagcatcccatgcgctttatcaaatataactagtgaccatgctccacagttgtgtggcttt |
50389021 |
T |
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| Q |
509 |
tgtttgtcatcaaaggtatcaatggaaaggctccaagtagtttggctagcgtgcatttgacaaatttggaagaaacacaataatagattttgtcaaaaag |
608 |
Q |
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| T |
50389022 |
tgtttatcatcaaaggtatcaatggaaaggcttcaagtagtttggctagcgtgcatttgacaaatttggaagaaacacaataatagattttttcaaaaag |
50389121 |
T |
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| Q |
609 |
aatcatgggtagcggatattgtggataggggaaactacatttgtggtggttgcataaaacaatttcaagacattggttatggtgtctaaatcattcgtgg |
708 |
Q |
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| T |
50389122 |
aatcatgggtagcggatattgtggataggggaaactacatttgtggtggttgcataaaacaatttcaagacattggttatg--gtctaaatcattcgtgg |
50389219 |
T |
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| Q |
709 |
tcgaacccaattgagtgctttcatgtgtaatagtt |
743 |
Q |
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| T |
50389220 |
tcgaacccaattgagtgctttcatgtgtaatagtt |
50389254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 817 - 867
Target Start/End: Original strand, 50389328 - 50389378
Alignment:
| Q |
817 |
ggattattctcaattgaggttttggtgatttgtatcttaggttgatgatgt |
867 |
Q |
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| T |
50389328 |
ggattattctcaattgaggttttggtgatttgtatcttaggttgttgatgt |
50389378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 50383523 - 50383640
Alignment:
| Q |
173 |
ttaaaatgaaattgtcattcattttcacttgaagtataatataaccaactagaattcagtttctctcacatgattcatctgctagagcctcagaaatcaa |
272 |
Q |
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| T |
50383523 |
ttaaaatgaaattgtcattgattttcccttgaagaattatataccgattcagaattccgtttctcttacaggattcataggccagagcctcataagttaa |
50383622 |
T |
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| Q |
273 |
agatataatttggaataa |
290 |
Q |
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| T |
50383623 |
aaatataatttgaaataa |
50383640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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