View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2892_low_15 (Length: 236)

Name: NF2892_low_15
Description: NF2892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2892_low_15
NF2892_low_15
[»] chr6 (2 HSPs)
chr6 (22-221)||(22879339-22879538)
chr6 (53-221)||(22897459-22897627)
[»] chr2 (1 HSPs)
chr2 (22-221)||(198211-198415)
[»] chr1 (3 HSPs)
chr1 (22-221)||(17229566-17229770)
chr1 (128-210)||(19145684-19145766)
chr1 (128-210)||(23673020-23673102)
[»] chr7 (2 HSPs)
chr7 (22-80)||(19537813-19537871)
chr7 (128-210)||(41552008-41552090)
[»] scaffold0031 (1 HSPs)
scaffold0031 (127-217)||(40870-40959)
[»] chr4 (1 HSPs)
chr4 (128-210)||(55045307-55045389)
[»] chr3 (1 HSPs)
chr3 (128-210)||(4270753-4270835)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 22879538 - 22879339
Alignment:
Q  22 aaatgatttgttaaaccctaatgagatggtaatttgtgttgatttgaaattatttgtgaccaacttcaaaggaattaaaatttcatggtgtagcaattaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  22879538 aaatgatttgttaaaccctaatgagatggtaatttgtgttgatttgaaattatttgtgaccaacttcaaaggaattagaatttcatggtgtagaaattaa 22879439  T
Q  122 tcatattatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatcttctgttacatt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879438 tcatattatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatcttctgttacatt 22879339  T

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Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 22897627 - 22897459
Alignment:
Q  53 atttgtgttgatttgaaattatttgtgaccaacttcaaaggaattaaaatttcatggtgtagcaattaatcatattatgatattgattttgtgagaatta 152  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22897627 atttgtgttgatttgaaattatttgtgaacaacttcaaaggaattagaatttcatggtgtagaaattaatcatattatgatattgattttgtgagaatta 22897528  T
Q  153 tgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatcttctgttacatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22897527 tgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatcttctgttacatt 22897459  T

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Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 198415 - 198211
Alignment:
Q  22 aaatgatttgttaaaccctaatgagatggtaatttgtgttgatttgaaattatttgtgaccaacttcaaaggaattaaaatttcatggtgtagcaattaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  198415 aaatgatttgttaaaccctaatgagatggtaatttgtgttgatttgaaattatttgtgaccaacttcaaaggaattagaatttcatggtgtagaaattaa 198316  T
Q  122 tcatat-----tatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatcttctgtt 216  Q
    ||||||     ||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  198315 tcatattagggtatgatactgattttgtgagaattatgggttaattgaaacctgatagtatttagaagtttaggtcataattttgttaaaatcttctatt 198216  T
Q  217 acatt 221  Q
    |||||    
T  198215 acatt 198211  T

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Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 17229770 - 17229566
Alignment:
Q  22 aaatgatttgttaaaccctaatgagatggtaatttgtgttgatttgaaattatttgtgaccaacttcaaaggaattaaaatttcatggtgtagcaattaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  17229770 aaatgatttgttaaaccctaatgagatggtaatttgtgttgatttgaaattatttgtgaccaacttcaaaggaattagaatttcatggtgtagaaattaa 17229671  T
Q  122 tcatatt-----atgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatcttctgtt 216  Q
    |||||||     |||||| ||||||||||||||||||| |||||||||| ||| |||||| |||||||||||| ||||||||||||||||||||||||||    
T  17229670 tcatattagggaatgatactgattttgtgagaattatgggttaattgaaacctaatagtaattagaagtttagctcataattttgttaaaatcttctgtt 17229571  T
Q  217 acatt 221  Q
    |||||    
T  17229570 acatt 17229566  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 19145684 - 19145766
Alignment:
Q  128 tatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatct 210  Q
    ||||||| |||||| |||| |||| || |||||   |||| |||||||||||||| |||||| ||||||||  ||||||||||    
T  19145684 tatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatct 19145766  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 23673020 - 23673102
Alignment:
Q  128 tatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatct 210  Q
    ||||||| |||||| |||| |||| || |||||   |||| |||||||||||||| |||||| ||||||||  ||||||||||    
T  23673020 tatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatct 23673102  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 19537871 - 19537813
Alignment:
Q  22 aaatgatttgttaaaccctaatgagatggtaatttgtgttgatttgaaattatttgtga 80  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||    
T  19537871 aaatgatttgttaaaccctaatgagatggtcatttgtgctgatttcaaattatttgtga 19537813  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 41552090 - 41552008
Alignment:
Q  128 tatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatct 210  Q
    ||||||| |||||| |||| |||| || |||||   |||| |||||||||||||| |||||| ||||||||  ||||||||||    
T  41552090 tatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatct 41552008  T

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Target: scaffold0031 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 40959 - 40870
Alignment:
Q  127 ttatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatcttctgtta 217  Q
    |||||||| |||||| ||||||| | |||||||| |||| | |||||||||||| |||||||  |||||||| | ||||||| ||||||||    
T  40959 ttatgatactgatttagtgagaactttgagttaaatgaaacttgatagtatttaaaagtttacttcataattatcttaaaat-ttctgtta 40870  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 55045389 - 55045307
Alignment:
Q  128 tatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatct 210  Q
    ||||||| |||||| |||| |||| || |||||   |||| |||||||||||||| |||||| ||||||||  ||||||||||    
T  55045389 tatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatct 55045307  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 4270835 - 4270753
Alignment:
Q  128 tatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaatct 210  Q
    ||||||| |||||| |||| |||| || |||||   |||| |||||||||||||| |||||| ||||||||  ||||||||||    
T  4270835 tatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatct 4270753  T

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